C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC11 homolog C (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139538 Sec11c-003 ENSMUSG00000024516 10090 + 18:65800603-65817657 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000139538
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000139538 1.779±0.68 0.676±0.13 3.780±0.09 2.332±0.20 2.364±0.58 3.553±0.36 0.564±0.16 0.712±0.16 1.801±0.89 2.485±0.42 1.456±0.14 1.488±1.09 2.179±0.67 0.352±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086L CIL_00086L_0002 VISTA 18:65229356-65832579
CIL_0006O6 CIL_0006O6_0002 CGP 18:65800549-65886579

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299714 SEC11C-007 nonsense_mediated_decay Homo_sapiens 0 542
ENST00000509791 SEC11C-005 protein_coding Homo_sapiens 0 472
ENST00000585864 SEC11C-004 retained_intron Homo_sapiens 0 486
ENST00000587834 SEC11C-001 protein_coding Homo_sapiens 0 540
ENST00000588875 SEC11C-006 protein_coding Homo_sapiens 0 472
ENST00000591406 SEC11C-008 retained_intron Homo_sapiens 0 617

Loading