C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Rab40B, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025170 Rab40b 10090 - 11:121356125-121388251 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000106107 Rab40b-001 121356125-121388251 protein_coding
  ENSMUST00000124639 Rab40b-002 121359591-121388221 processed_transcript
  ENSMUST00000135290 Rab40b-003 121359610-121388230 processed_transcript
  ENSMUST00000149948 Rab40b-004 121358002-121388065 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000106107ENSMUST00000135290ENSMUST00000149948
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000106107 4.611±0.29 5.757±0.51 1.939±0.29 3.584±2.08 4.111±1.77 1.367±0.56 0.901±0.23 1.114±0.43 0.318±0.09 1.464±0.15 7.575±0.63 2.906±1.19 0.160±0.11 0.190±0.10
ENSMUST00000135290 N/A 7.334±0.00 N/A N/A N/A N/A N/A N/A 0.334±0.02 N/A N/A N/A N/A N/A
ENSMUST00000149948 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.145±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000IW CIL_0000IW_0002 CGP 11:121327224-121388251
CIL_0000IX CIL_0000IX_0002 CGP 11:121356125-121431288

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005525 IEA GTP binding
GO:0005575 ND cellular_component
GO:0005886 IEA plasma membrane
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016567 IEA protein ubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042410 rab40b RAB40B, member RAS oncogene family protein_coding Danio_rerio
ENSG00000102128 RAB40AL RAB40A, member RAS oncogene family-like protein_coding Homo_sapiens
ENSG00000141542 RAB40B RAB40B, member RAS oncogene family protein_coding Homo_sapiens
ENSG00000172476 RAB40A RAB40A, member RAS oncogene family protein_coding Homo_sapiens

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