C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000IX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000141542-ENSG00000141560 CGP 9606 17:82654973-82730328
GeneTranscriptPositionBiotype
ENSG00000141542 (RAB40B)
RAB40B, member RAS oncogene family 		ENST00000269347 (RAB40B-002) 82657067-82698687 protein_coding
ENST00000538809 (RAB40B-005) 82657911-82698662 protein_coding
ENST00000570676 (RAB40B-008) 82657793-82664895 retained_intron
ENST00000571554 (RAB40B-007) 82661011-82696870 processed_transcript
ENST00000571880 (RAB40B-012) 82655037-82656881 processed_transcript
ENST00000571995 (RAB40B-001) 82654973-82698728 protein_coding
ENST00000572603 (RAB40B-006) 82661081-82698654 processed_transcript
ENST00000573395 (RAB40B-011) 82657977-82658849 retained_intron
ENST00000574132 (RAB40B-009) 82657706-82659759 retained_intron
ENST00000576148 (RAB40B-010) 82657915-82661031 protein_coding
ENST00000576359 (RAB40B-003) 82657068-82659589 retained_intron
ENSG00000141560 (FN3KRP)
fructosamine 3 kinase related protein 		ENST00000269373 (FN3KRP-001) 82716683-82728017 protein_coding
ENST00000571482 (FN3KRP-008) 82719017-82726493 retained_intron
ENST00000571594 (FN3KRP-010) 82727115-82730328 nonsense_mediated_decay
ENST00000573158 (FN3KRP-007) 82716787-82727143 protein_coding
ENST00000574206 (FN3KRP-005) 82716760-82726906 nonsense_mediated_decay
ENST00000574356 (FN3KRP-004) 82716749-82726916 nonsense_mediated_decay
ENST00000574832 (FN3KRP-003) 82716722-82727501 nonsense_mediated_decay
ENST00000576363 (FN3KRP-009) 82722609-82727097 retained_intron
ENST00000577128 (FN3KRP-006) 82716774-82727113 protein_coding
ENSG00000263063 (RP11-388C12.1)
 ENST00000574471 (RP11-388C12.1-001) 82713908-82716255 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0000IX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025170-ENSMUSG00000039253 CGP 10090 11:121356125-121431288
GeneTranscriptPositionBiotype
ENSMUSG00000025170 (Rab40b)
Rab40B, member RAS oncogene family 		ENSMUST00000106107 (Rab40b-001) 121356125-121388251 protein_coding
ENSMUST00000124639 (Rab40b-002) 121359591-121388221 processed_transcript
ENSMUST00000135290 (Rab40b-003) 121359610-121388230 processed_transcript
ENSMUST00000149948 (Rab40b-004) 121358002-121388065 processed_transcript
ENSMUSG00000039253 (Fn3krp)
fructosamine 3 kinase related protein 		ENSMUST00000038096 (Fn3krp-001) 121421401-121431288 protein_coding
ENSMUSG00000083155 (Gm11866)
predicted gene 11866 		ENSMUST00000120209 (Gm11866-001) 121415092-121415426 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000IX_0001ENSG00000141542ENST00000269347ENST00000538809ENST00000570676ENST00000571554ENST00000571880ENST00000571995ENST00000572603ENST00000573395ENST00000574132ENST00000576148ENST00000576359ENSG00000141560ENST00000269373ENST00000571482ENST00000571594ENST00000573158ENST00000574206ENST00000574356ENST00000574832ENST00000576363ENST00000577128ENSG00000263063ENST00000574471CIL_0000IX_0002ENSMUSG00000025170ENSMUST00000106107ENSMUST00000124639ENSMUST00000135290ENSMUST00000149948ENSMUSG00000039253ENSMUST00000038096ENSMUSG00000083155ENSMUST00000120209
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000IX_0001ENSG00000141542ENST00000269347ENST00000538809ENST00000571995ENST00000574132ENST00000576359ENSG00000141560ENST00000269373ENST00000571594ENST00000573158ENST00000574206ENST00000574356ENST00000574832ENST00000576363ENST00000577128ENSG00000263063ENST00000574471CIL_0000IX_0002ENSMUSG00000025170ENSMUST00000106107ENSMUST00000135290ENSMUST00000149948ENSMUSG00000039253ENSMUST00000038096ENSMUSG00000083155ENSMUST00000120209
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000141542 ENST00000269347 2.023±0.00 1.695±0.00 N/A 15.962±0.41 3.103±2.81 2.779±1.32 4.680±3.22 5.892±4.41 1.537±0.00 1.382±0.69 3.119±0.06 3.827±1.40 1.465±0.61 3.993±1.88
ENST00000538809 N/A N/A 3.003±0.00 31.907±0.00 0.551±0.00 2.776±0.00 3.762±0.00 N/A 4.212±0.00 1.636±0.00 16.996±0.00 3.550±0.00 N/A N/A
ENST00000570676 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571554 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571880 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571995 N/A 0.905±0.00 N/A 2.257±0.00 1.193±0.00 N/A N/A N/A 0.639±0.00 N/A 0.775±0.00 1.746±0.78 0.477±0.16 N/A
ENST00000572603 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573395 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574132 N/A N/A N/A 21.825±0.00 0.381±0.00 N/A N/A N/A N/A 3.605±0.00 3.446±0.00 2.593±0.00 N/A N/A
ENST00000576148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576359 N/A N/A N/A 3.989±0.00 N/A N/A N/A 1.057±0.00 0.504±0.00 N/A N/A 6.946±0.00 N/A 1.546±0.00
ENSG00000141560 ENST00000269373 8.017±0.00 13.820±0.00 0.218±0.00 18.435±15.37 11.470±10.73 7.181±6.59 2.674±2.36 8.486±6.11 7.720±0.00 9.391±0.00 2.700±0.00 23.338±13.50 21.418±8.38 16.250±0.00
ENST00000571482 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571594 N/A N/A N/A N/A N/A N/A 0.255±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000573158 N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.768±0.00 N/A N/A N/A N/A
ENST00000574206 N/A N/A 1.462±0.00 N/A N/A N/A 0.307±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000574356 N/A N/A N/A N/A N/A N/A N/A N/A 0.888±0.00 N/A N/A 2.355±0.00 N/A N/A
ENST00000574832 N/A N/A N/A N/A N/A 1.215±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576363 N/A N/A N/A N/A N/A 3.802±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577128 N/A N/A 0.464±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.846±0.00 N/A N/A
ENSG00000263063 ENST00000574471 N/A 0.039±0.00 N/A 0.229±0.07 0.080±0.00 0.369±0.00 N/A 0.181±0.00 0.170±0.00 0.087±0.00 0.481±0.00 0.086±0.06 0.067±0.01 1.279±0.19
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025170 ENSMUST00000106107 4.611±0.29 5.757±0.51 1.939±0.29 3.584±2.08 4.111±1.77 1.367±0.56 0.901±0.23 1.114±0.43 0.318±0.09 1.464±0.15 7.575±0.63 2.906±1.19 0.160±0.11 0.190±0.10
ENSMUST00000124639 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135290 N/A 7.334±0.00 N/A N/A N/A N/A N/A N/A 0.334±0.02 N/A N/A N/A N/A N/A
ENSMUST00000149948 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.145±0.00 N/A
ENSMUSG00000039253 ENSMUST00000038096 9.463±1.09 4.182±1.27 4.454±0.25 3.351±0.32 4.879±0.78 3.045±0.53 2.604±0.49 9.600±0.81 12.770±10.20 5.194±0.20 1.373±0.38 5.731±1.89 1.952±0.88 2.695±1.44
ENSMUSG00000083155 ENSMUST00000120209 N/A N/A N/A N/A N/A N/A N/A N/A 0.055±0.00 N/A N/A N/A N/A N/A

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