C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: staufen (RNA binding protein) homolog 2 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027052 Stau2-003 ENSMUSG00000025920 10090 - 1:16228810-16519306 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000027052
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000027052 0.937±0.06 0.869±0.20 1.901±0.00 9.521±1.87 0.914±0.35 0.643±0.21 4.504±1.37 1.572±0.44 0.508±0.00 7.063±1.13 0.608±0.00 0.861±0.28 0.285±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001D6 CIL_0001D6_0002 CGP 1:16105774-16520112
CIL_0001NO CIL_0001NO_0002 CGP 1:16228674-16619489

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003725 ISO double-stranded RNA binding
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005874 IEA microtubule
GO:0006810 IEA transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355780 STAU2-009 protein_coding Homo_sapiens 0 2017
ENST00000358757 RP11-463D19.2-001 nonsense_mediated_decay Homo_sapiens 0 270
ENST00000453704 RP13-140E4.1-001 processed_pseudogene Homo_sapiens 0 684
ENST00000517542 STAU2-007 protein_coding Homo_sapiens 0 1929
ENST00000518502 STAU2-015 protein_coding Homo_sapiens 0 532
ENST00000518767 STAU2-005 protein_coding Homo_sapiens 0 1391
ENST00000518981 STAU2-003 nonsense_mediated_decay Homo_sapiens 0 1487
ENST00000519961 STAU2-012 protein_coding Homo_sapiens 0 1929
ENST00000520872 STAU2-024 processed_transcript Homo_sapiens 0 233
ENST00000520945 STAU2-023 processed_transcript Homo_sapiens 9.94922e-44 180
ENST00000521210 STAU2-011 protein_coding Homo_sapiens 0 1709
ENST00000521293 STAU2-026 processed_transcript Homo_sapiens 0 425
ENST00000521419 STAU2-013 protein_coding Homo_sapiens 0 451
ENST00000521447 STAU2-025 protein_coding Homo_sapiens 0 942
ENST00000521451 STAU2-006 protein_coding Homo_sapiens 0 1286
ENST00000521727 STAU2-004 protein_coding Homo_sapiens 0 1929
ENST00000521736 STAU2-017 protein_coding Homo_sapiens 0 335
ENST00000521845 STAU2-020 processed_transcript Homo_sapiens 0 230
ENST00000522509 STAU2-002 protein_coding Homo_sapiens 0 2017
ENST00000522695 STAU2-014 protein_coding Homo_sapiens 0 2911
ENST00000522818 STAU2-027 processed_transcript Homo_sapiens 0 667
ENST00000522962 STAU2-021 processed_transcript Homo_sapiens 0 451
ENST00000523533 STAU2-029 protein_coding Homo_sapiens 0 545
ENST00000523558 STAU2-010 protein_coding Homo_sapiens 0 2047
ENST00000524104 STAU2-008 protein_coding Homo_sapiens 0 540
ENST00000524113 STAU2-028 retained_intron Homo_sapiens 0 544
ENST00000524191 STAU2-019 processed_transcript Homo_sapiens 0 228
ENST00000524300 STAU2-001 protein_coding Homo_sapiens 0 2850

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