C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: staufen (RNA binding protein) homolog 2 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115359 Stau2-002 ENSMUSG00000025920 10090 - 1:16459715-16519260 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonENSMUST00000115359
Transcript ID Colon
ENSMUST00000115359 0.803±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001D6 CIL_0001D6_0002 CGP 1:16105774-16520112
CIL_0001NO CIL_0001NO_0002 CGP 1:16228674-16619489

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003725 ISO double-stranded RNA binding
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005874 IEA microtubule
GO:0006810 IEA transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355780 STAU2-009 protein_coding Homo_sapiens 0 228
ENST00000358757 RP11-463D19.2-001 nonsense_mediated_decay Homo_sapiens 6.02558e-44 182
ENST00000517542 STAU2-007 protein_coding Homo_sapiens 0 231
ENST00000518981 STAU2-003 nonsense_mediated_decay Homo_sapiens 0 230
ENST00000519818 STAU2-016 processed_transcript Homo_sapiens 0 387
ENST00000519961 STAU2-012 protein_coding Homo_sapiens 0 496
ENST00000520872 STAU2-024 processed_transcript Homo_sapiens 0 503
ENST00000520945 STAU2-023 processed_transcript Homo_sapiens 0 279
ENST00000521293 STAU2-026 processed_transcript Homo_sapiens 0 231
ENST00000521419 STAU2-013 protein_coding Homo_sapiens 0 228
ENST00000521447 STAU2-025 protein_coding Homo_sapiens 0 228
ENST00000521727 STAU2-004 protein_coding Homo_sapiens 0 230
ENST00000521736 STAU2-017 protein_coding Homo_sapiens 0 228
ENST00000521845 STAU2-020 processed_transcript Homo_sapiens 0 435
ENST00000522061 STAU2-022 processed_transcript Homo_sapiens 0 283
ENST00000522509 STAU2-002 protein_coding Homo_sapiens 0 228
ENST00000522695 STAU2-014 protein_coding Homo_sapiens 0 228
ENST00000522962 STAU2-021 processed_transcript Homo_sapiens 0 503
ENST00000524104 STAU2-008 protein_coding Homo_sapiens 0 228
ENST00000524113 STAU2-028 retained_intron Homo_sapiens 0 228
ENST00000524191 STAU2-019 processed_transcript Homo_sapiens 0 211
ENST00000524300 STAU2-001 protein_coding Homo_sapiens 0 503

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