C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, N
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027404 Ptprn-001 ENSMUSG00000026204 10090 - 1:75247027-75264213 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027404
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027404 0.029±0.01 16.400±3.43 0.037±0.00 38.638±42.19 0.052±0.02 2.333±0.88 0.236±0.02 0.168±0.03 0.033±0.02 0.390±0.20 0.060±0.03 0.576±0.37 0.554±0.29 0.321±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0002 VISTA 1:75047166-75647630
CIL_0006NW CIL_0006NW_0002 CGP 1:75236406-75264502
CIL_0006NX CIL_0006NX_0002 CGP 1:75247027-75278415

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000302 IEA response to reactive oxygen species
GO:0004725 TAS protein tyrosine phosphatase activity
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0007185 TAS transmembrane receptor protein tyrosine phosphatase signaling pathway
GO:0009749 IEA response to glucose
GO:0016020 TAS membrane
GO:0019221 IEA cytokine-mediated signaling pathway
GO:0030507 IEA spectrin binding
GO:0032868 IEA response to insulin
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0043627 IEA response to estrogen
GO:0051020 IEA GTPase binding
GO:0051591 IEA response to cAMP

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295718 PTPRN-001 protein_coding Homo_sapiens 0 3203
ENST00000409251 PTPRN-003 protein_coding Homo_sapiens 0 1941
ENST00000412847 PTPRN-012 protein_coding Homo_sapiens 0 514
ENST00000423636 PTPRN-021 protein_coding Homo_sapiens 0 3079
ENST00000440552 PTPRN-011 protein_coding Homo_sapiens 0 468
ENST00000442029 PTPRN-013 protein_coding Homo_sapiens 0 399
ENST00000443981 PTPRN-020 protein_coding Homo_sapiens 0 580
ENST00000446182 PTPRN-008 protein_coding Homo_sapiens 0 510
ENST00000451506 PTPRN-009 protein_coding Homo_sapiens 0 399
ENST00000460801 PTPRN-007 retained_intron Homo_sapiens 0 420
ENST00000462351 PTPRN-006 retained_intron Homo_sapiens 0 2338
ENST00000468454 PTPRN-014 processed_transcript Homo_sapiens 0 219
ENST00000476930 PTPRN-016 retained_intron Homo_sapiens 0 204
ENST00000477819 PTPRN-015 retained_intron Homo_sapiens 4e-20 102
ENST00000486480 PTPRN-017 retained_intron Homo_sapiens 0 455
ENST00000489650 PTPRN-018 retained_intron Homo_sapiens 3e-26 122
ENST00000497977 PTPRN-019 processed_transcript Homo_sapiens 0 499
ENST00000606213 PTPRN-005 nonsense_mediated_decay Homo_sapiens 0 383

Loading