C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SPEG complex locus
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026207 Speg 10090 + 1:75375297-75432320 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000087122 Speg-001 75375297-75432320 protein_coding
  ENSMUST00000113587 Speg-014 75400635-75404562 protein_coding
  ENSMUST00000113588 Speg-013 75400521-75404370 protein_coding
  ENSMUST00000113589 Speg-008 75400085-75403990 protein_coding
  ENSMUST00000113590 Speg-002 75382114-75404563 protein_coding
  ENSMUST00000122266 Speg-009 75401010-75404207 protein_coding
  ENSMUST00000125118 Speg-007 75384700-75387948 retained_intron
  ENSMUST00000125306 Speg-012 75382138-75387895 nonsense_mediated_decay
  ENSMUST00000132222 Speg-004 75385512-75389104 processed_transcript
  ENSMUST00000132228 Speg-011 75384828-75391923 nonsense_mediated_decay
  ENSMUST00000137868 Speg-003 75385610-75432304 protein_coding
  ENSMUST00000143679 Speg-010 75423510-75427623 retained_intron
  ENSMUST00000146705 Speg-005 75383556-75384975 processed_transcript
  ENSMUST00000148515 Speg-006 75382114-75388345 protein_coding
  ENSMUST00000187214 Speg-015 75382126-75383382 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087122ENSMUST00000113587ENSMUST00000113588ENSMUST00000113589ENSMUST00000113590ENSMUST00000122266ENSMUST00000137868
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087122 0.700±0.14 0.500±0.02 N/A N/A 1.242±0.93 N/A 6.908±0.59 N/A N/A 0.800±0.08 15.453±2.84 N/A N/A 0.042±0.00
ENSMUST00000113587 N/A N/A 28.617±2.14 34.570±0.00 N/A N/A N/A N/A 3.273±1.08 N/A N/A 6.625±0.69 7.062±3.22 0.378±0.00
ENSMUST00000113588 N/A N/A N/A N/A N/A N/A N/A 3.782±0.33 0.999±0.17 N/A N/A N/A N/A N/A
ENSMUST00000113589 N/A N/A N/A N/A N/A N/A N/A 4.817±0.00 3.844±1.54 N/A N/A N/A N/A N/A
ENSMUST00000113590 4.644±2.73 1.529±0.18 6.186±0.00 4.105±1.49 N/A 3.148±0.35 N/A 1.387±0.24 0.074±0.00 N/A N/A 6.009±0.76 1.450±0.31 N/A
ENSMUST00000122266 N/A 11.389±4.69 N/A N/A 4.015±0.00 12.903±3.73 N/A 5.426±1.36 N/A N/A N/A 17.937±2.41 N/A N/A
ENSMUST00000137868 5.131±3.86 1.081±0.28 11.210±1.25 5.011±4.08 2.043±2.11 2.958±0.83 13.974±0.63 1.077±0.21 0.159±0.07 1.483±0.69 27.176±7.69 4.415±2.33 1.087±0.40 0.061±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0002 VISTA 1:75047166-75647630
CIL_0006O0 CIL_0006O0_0002 CGP 1:75360329-75432320
CIL_0006O1 CIL_0006O1_0002 CGP 1:75375297-75443179

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0006468 IEA protein phosphorylation
GO:0042692 IEA muscle cell differentiation
GO:0055013 IMP cardiac muscle cell development
GO:0060541 IMP respiratory system development
GO:0072358 IMP cardiovascular system development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009567 SPEG (1 of 2) SPEG complex locus protein_coding Danio_rerio
ENSDARG00000039256 speg SPEG complex locus protein_coding Danio_rerio
ENSG00000072195 SPEG SPEG complex locus protein_coding Homo_sapiens

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