C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SPEG complex locus
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000072195 SPEG 9606 + 2:219434846-219498287 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000312358 SPEG-004 219434846-219493632 protein_coding
  ENST00000396686 SPEG-010 219461255-219466655 protein_coding
  ENST00000396688 SPEG-006 219460766-219466841 protein_coding
  ENST00000396689 SPEG-007 219461385-219466862 protein_coding
  ENST00000396698 SPEG-014 219442045-219466860 protein_coding
  ENST00000403148 SPEG-016 219442016-219444844 nonsense_mediated_decay
  ENST00000409595 SPEG-025 219445045-219451783 nonsense_mediated_decay
  ENST00000412982 SPEG-021 219491867-219498244 protein_coding
  ENST00000420132 SPEG-015 219442049-219444915 nonsense_mediated_decay
  ENST00000431523 SPEG-009 219442023-219448515 protein_coding
  ENST00000435853 SPEG-013 219441516-219448171 protein_coding
  ENST00000451076 SPEG-023 219444657-219448158 protein_coding
  ENST00000452101 SPEG-011 219442047-219448191 nonsense_mediated_decay
  ENST00000462545 SPEG-005 219450670-219466861 processed_transcript
  ENST00000463218 SPEG-020 219451741-219464667 processed_transcript
  ENST00000464989 SPEG-002 219443674-219466861 retained_intron
  ENST00000475104 SPEG-022 219497691-219498287 retained_intron
  ENST00000475921 SPEG-012 219461240-219466861 retained_intron
  ENST00000485069 SPEG-008 219471662-219474378 retained_intron
  ENST00000485813 SPEG-024 219445627-219493593 processed_transcript
  ENST00000491248 SPEG-017 219445580-219448455 processed_transcript
  ENST00000496786 SPEG-019 219461222-219464654 processed_transcript
  ENST00000497065 SPEG-018 219445551-219448395 processed_transcript
  ENST00000498378 SPEG-001 219437275-219466861 processed_transcript
  ENST00000617028 SPEG-201 219496355-219498287 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000312358ENST00000396686ENST00000396688ENST00000396689ENST00000396698ENST00000412982ENST00000451076ENST00000464989ENST00000485813ENST00000498378
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000312358 0.561±0.00 N/A N/A N/A 2.872±0.00 N/A 5.198±4.96 0.240±0.00 N/A N/A 21.500±7.22 1.419±1.21 N/A N/A
ENST00000396686 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.952±0.00 2.087±0.00 N/A
ENST00000396688 N/A N/A N/A N/A N/A 14.921±0.00 N/A N/A N/A N/A N/A 8.653±0.00 N/A N/A
ENST00000396689 N/A 10.298±0.00 0.206±0.00 3.093±2.17 N/A 27.174±0.00 N/A 1.452±0.00 N/A N/A N/A 12.942±0.00 1.544±0.00 13.105±0.00
ENST00000396698 2.678±0.00 4.186±0.00 N/A 2.544±0.00 N/A N/A N/A 0.687±0.00 N/A 4.057±0.00 N/A N/A 1.966±1.26 N/A
ENST00000412982 N/A N/A N/A N/A N/A N/A N/A N/A 0.138±0.00 N/A N/A N/A N/A N/A
ENST00000451076 N/A N/A 0.438±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464989 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.295±0.00 N/A N/A
ENST00000485813 0.333±0.00 1.912±0.00 N/A 2.239±0.00 1.700±0.00 6.185±0.00 8.227±0.00 N/A 0.022±0.00 1.017±0.00 23.961±21.55 1.794±1.52 0.545±0.06 3.994±0.00
ENST00000498378 N/A N/A N/A N/A N/A N/A 0.387±0.00 N/A 0.064±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0001 VISTA 2:219106772-219707284
CIL_0006O0 CIL_0006O0_0001 CGP 2:219418377-219498287
CIL_0006O1 CIL_0006O1_0001 CGP 2:219434846-219506988

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001701 IEA in utero embryonic development
GO:0004672 IEA protein kinase activity
GO:0004674 IEA protein serine/threonine kinase activity
GO:0004713 IEA protein tyrosine kinase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0006468 IEA protein phosphorylation
GO:0007517 TAS muscle organ development
GO:0008285 TAS negative regulation of cell proliferation
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0042692 IEA muscle cell differentiation
GO:0055013 IEA cardiac muscle cell development
GO:0060541 IEA respiratory system development
GO:0072358 IEA cardiovascular system development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009567 SPEG (1 of 2) SPEG complex locus protein_coding Danio_rerio
ENSDARG00000039256 speg SPEG complex locus protein_coding Danio_rerio
ENSMUSG00000026207 Speg SPEG complex locus protein_coding Mus_musculus

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