C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SPEG complex locus
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113590 Speg-002 ENSMUSG00000026207 10090 + 1:75382114-75404563 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonKidneyLiverOvaryPlacentaENSMUST00000113590
Transcript ID Adipose Adrenal Bladder Brain Colon Kidney Liver Ovary Placenta
ENSMUST00000113590 4.644±2.73 1.529±0.18 6.186±0.00 4.105±1.49 3.148±0.35 1.387±0.24 0.074±0.00 6.009±0.76 1.450±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0002 VISTA 1:75047166-75647630
CIL_0006O0 CIL_0006O0_0002 CGP 1:75360329-75432320
CIL_0006O1 CIL_0006O1_0002 CGP 1:75375297-75443179

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0006468 IEA protein phosphorylation
GO:0055013 IMP cardiac muscle cell development
GO:0060541 IMP respiratory system development
GO:0072358 IMP cardiovascular system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000312358 SPEG-004 protein_coding Homo_sapiens 0 2846
ENST00000396686 SPEG-010 protein_coding Homo_sapiens 0 998
ENST00000396688 SPEG-006 protein_coding Homo_sapiens 0 998
ENST00000396689 SPEG-007 protein_coding Homo_sapiens 0 998
ENST00000396698 SPEG-014 protein_coding Homo_sapiens 0 3450
ENST00000403148 SPEG-016 nonsense_mediated_decay Homo_sapiens 1.4013e-45 187
ENST00000409595 SPEG-025 nonsense_mediated_decay Homo_sapiens 3.9937e-43 178
ENST00000420132 SPEG-015 nonsense_mediated_decay Homo_sapiens 0 287
ENST00000431523 SPEG-009 protein_coding Homo_sapiens 0 508
ENST00000435853 SPEG-013 protein_coding Homo_sapiens 0 398
ENST00000451076 SPEG-023 protein_coding Homo_sapiens 0 560
ENST00000452101 SPEG-011 nonsense_mediated_decay Homo_sapiens 0 398
ENST00000462545 SPEG-005 processed_transcript Homo_sapiens 0 867
ENST00000463218 SPEG-020 processed_transcript Homo_sapiens 0 601
ENST00000464989 SPEG-002 retained_intron Homo_sapiens 0 2852
ENST00000475921 SPEG-012 retained_intron Homo_sapiens 0 998
ENST00000485813 SPEG-024 processed_transcript Homo_sapiens 0 2165
ENST00000491248 SPEG-017 processed_transcript Homo_sapiens 0 453
ENST00000496786 SPEG-019 processed_transcript Homo_sapiens 0 545
ENST00000498378 SPEG-001 processed_transcript Homo_sapiens 0 3306

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