C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB17, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000130042 Rab17-004 ENSMUSG00000026304 10090 - 1:90960001-90969644 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartLungMuscleOvaryTestisENSMUST00000130042
Transcript ID Adrenal Brain Breast Heart Lung Muscle Ovary Testis
ENSMUST00000130042 0.097±0.00 0.039±0.00 1.276±0.00 0.233±0.00 0.457±0.12 0.124±0.01 0.706±0.26 0.301±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008L9 CIL_0008L9_0002 VISTA 1:90453497-91055787
CIL_0007RW CIL_0007RW_0002 VISTA 1:90676298-91284359
CIL_0008D3 CIL_0008D3_0002 VISTA 1:90908179-91512308
CIL_0000XK CIL_0000XK_0002 CGP 1:90953108-90969661
CIL_0002H4 CIL_0002H4_0002 CGP 1:90958133-91128944

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0007264 IEA small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264601 RAB17-001 protein_coding Homo_sapiens 0 379
ENST00000409822 RAB17-011 protein_coding Homo_sapiens 0 316
ENST00000411462 RAB17-005 protein_coding Homo_sapiens 0 316
ENST00000414278 RAB17-003 nonsense_mediated_decay Homo_sapiens 0 316
ENST00000430445 RAB17-008 protein_coding Homo_sapiens 0 316
ENST00000477149 RAB17-004 retained_intron Homo_sapiens 0 195

Loading