C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB17, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000131428 Rab17-002 ENSMUSG00000026304 10090 - 1:90958135-90967667 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000131428
Transcript ID Adipose Brain Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000131428 0.059±0.00 0.019±0.00 1.690±0.00 0.138±0.00 7.239±0.61 1.490±0.00 0.029±0.01 0.802±0.34 0.943±1.04 0.044±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008L9 CIL_0008L9_0002 VISTA 1:90453497-91055787
CIL_0007RW CIL_0007RW_0002 VISTA 1:90676298-91284359
CIL_0008D3 CIL_0008D3_0002 VISTA 1:90908179-91512308
CIL_0000XK CIL_0000XK_0002 CGP 1:90953108-90969661
CIL_0002H4 CIL_0002H4_0002 CGP 1:90958133-91128944

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002415 IMP immunoglobulin transcytosis in epithelial cells mediated by polymeric immunoglobulin receptor
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016323 IDA basolateral plasma membrane
GO:0016324 IDA apical plasma membrane
GO:0019003 ISS GDP binding
GO:0030425 IDA dendrite
GO:0032401 IMP establishment of melanosome localization
GO:0032402 IMP melanosome transport
GO:0032456 IMP endocytic recycling
GO:0042470 IDA melanosome
GO:0043025 IDA neuronal cell body
GO:0045056 IMP transcytosis
GO:0046847 IMP filopodium assembly
GO:0050773 IMP regulation of dendrite development
GO:0051489 IMP regulation of filopodium assembly
GO:0051963 IMP regulation of synapse assembly
GO:0055037 IDA recycling endosome
GO:0055038 IDA recycling endosome membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264601 RAB17-001 protein_coding Homo_sapiens 0 475
ENST00000409822 RAB17-011 protein_coding Homo_sapiens 0 414
ENST00000411462 RAB17-005 protein_coding Homo_sapiens 0 335
ENST00000414278 RAB17-003 nonsense_mediated_decay Homo_sapiens 0 414
ENST00000430445 RAB17-008 protein_coding Homo_sapiens 0 318
ENST00000477149 RAB17-004 retained_intron Homo_sapiens 0 195

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