C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein tyrosine phosphatase, non-receptor type 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026384 Ptpn4 10090 - 1:119652467-119837613 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000064091 Ptpn4-001 119652467-119837613 protein_coding
  ENSMUST00000163179 Ptpn4-010 119726055-119783502 nonsense_mediated_decay
  ENSMUST00000163435 Ptpn4-002 119689801-119837347 protein_coding
  ENSMUST00000163621 Ptpn4-006 119773058-119836999 protein_coding
  ENSMUST00000164086 Ptpn4-011 119772998-119802442 protein_coding
  ENSMUST00000164269 Ptpn4-008 119692824-119741436 nonsense_mediated_decay
  ENSMUST00000166422 Ptpn4-005 119765129-119837071 nonsense_mediated_decay
  ENSMUST00000166624 Ptpn4-003 119658044-119687637 nonsense_mediated_decay
  ENSMUST00000168303 Ptpn4-004 119765469-119837071 protein_coding
  ENSMUST00000168429 Ptpn4-009 119743405-119802422 protein_coding
  ENSMUST00000168808 Ptpn4-007 119706024-119715993 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000064091ENSMUST00000163435ENSMUST00000164269ENSMUST00000166624
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000064091 1.983±0.30 0.938±0.38 0.368±0.01 5.851±0.08 2.067±0.60 0.464±0.08 1.344±0.41 1.378±0.64 0.618±0.42 2.585±0.45 0.760±0.29 1.970±0.85 1.011±0.32 2.156±0.83
ENSMUST00000163435 N/A 5.180±1.56 N/A N/A 5.264±1.94 1.667±0.65 N/A 1.009±0.00 0.521±0.10 1.966±0.21 N/A 4.504±2.03 0.874±0.00 4.898±2.23
ENSMUST00000164269 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.649±0.00
ENSMUST00000166624 N/A N/A N/A N/A N/A N/A N/A N/A 0.612±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WE CIL_0003WE_0002 CGP 1:119545037-119837613
CIL_0001TM CIL_0001TM_0002 CGP 1:119652467-119913208

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004726 IDA non-membrane spanning protein tyrosine phosphatase activity
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0008092 IEA cytoskeletal protein binding
GO:0009898 IEA cytoplasmic side of plasma membrane
GO:0019898 IEA extrinsic component of membrane
GO:0035335 IEA peptidyl-tyrosine dephosphorylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000183 ptpn4b protein tyrosine phosphatase, non-receptor type 4, b protein_coding Danio_rerio
ENSDARG00000000631 ptpn4a protein tyrosine phosphatase, non-receptor type 4, a protein_coding Danio_rerio
ENSG00000088179 PTPN4 protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte) protein_coding Homo_sapiens

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