C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003WE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000032324-ENSDARG00000000631 CGP 7955 9:29904006-30062951
GeneTranscriptPositionBiotype
ENSDARG00000000631 (ptpn4a)
protein tyrosine phosphatase, non-receptor type 4, a 		ENSDART00000000670 (ptpn4a-201) 29975916-30036561 protein_coding
ENSDART00000078823 (ptpn4a-001) 29973993-30023957 protein_coding
ENSDART00000151941 (ptpn4a-002) 30036403-30062951 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0003WE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026383-ENSMUSG00000026384 CGP 10090 1:119545037-119837613
GeneTranscriptPositionBiotype
ENSMUSG00000026383 (Epb4.1l5)
erythrocyte protein band 4.1-like 5 		ENSMUST00000027632 (Epb4.1l5-002) 119595074-119648617 protein_coding
ENSMUST00000052404 (Epb4.1l5-003) 119545037-119648936 protein_coding
ENSMUST00000163147 (Epb4.1l5-004) 119548131-119648934 protein_coding
ENSMUST00000185467 (Epb4.1l5-009) 119595442-119599240 retained_intron
ENSMUST00000187194 (Epb4.1l5-006) 119621951-119648624 protein_coding
ENSMUST00000187239 (Epb4.1l5-005) 119578137-119580424 retained_intron
ENSMUST00000189042 (Epb4.1l5-007) 119617655-119634000 retained_intron
ENSMUST00000191046 (Epb4.1l5-001) 119590742-119649000 protein_coding
ENSMUST00000191162 (Epb4.1l5-008) 119554227-119600305 retained_intron
ENSMUSG00000026384 (Ptpn4)
protein tyrosine phosphatase, non-receptor type 4 		ENSMUST00000064091 (Ptpn4-001) 119652467-119837613 protein_coding
ENSMUST00000163179 (Ptpn4-010) 119726055-119783502 nonsense_mediated_decay
ENSMUST00000163435 (Ptpn4-002) 119689801-119837347 protein_coding
ENSMUST00000163621 (Ptpn4-006) 119773058-119836999 protein_coding
ENSMUST00000164086 (Ptpn4-011) 119772998-119802442 protein_coding
ENSMUST00000164269 (Ptpn4-008) 119692824-119741436 nonsense_mediated_decay
ENSMUST00000166422 (Ptpn4-005) 119765129-119837071 nonsense_mediated_decay
ENSMUST00000166624 (Ptpn4-003) 119658044-119687637 nonsense_mediated_decay
ENSMUST00000168303 (Ptpn4-004) 119765469-119837071 protein_coding
ENSMUST00000168429 (Ptpn4-009) 119743405-119802422 protein_coding
ENSMUST00000168808 (Ptpn4-007) 119706024-119715993 retained_intron
ENSMUSG00000090277 (Gm8338)
predicted gene 8338 		ENSMUST00000163928 (Gm8338-001) 119817763-119818125 processed_pseudogene
ENSMUSG00000091876 (Gm3851)
predicted gene 3851 		ENSMUST00000168653 (Gm3851-001) 119787769-119788086 processed_pseudogene
ENSMUSG00000100436 (RP23-274C16.5)
predicted gene 29657 		ENSMUST00000189807 (RP23-274C16.5-001) 119793520-119794229 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003WE_0001ENSDARG00000000631ENSDART00000000670ENSDART00000078823ENSDART00000151941CIL_0003WE_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003WE_0001ENSDARG00000000631ENSDART00000000670ENSDART00000078823CIL_0003WE_0002ENSMUSG00000026383ENSMUST00000027632ENSMUST00000052404ENSMUST00000163147ENSMUST00000185467ENSMUST00000191046ENSMUSG00000026384ENSMUST00000064091ENSMUST00000163435ENSMUST00000164269ENSMUST00000166624ENSMUSG00000090277ENSMUST00000163928ENSMUSG00000091876ENSMUST00000168653ENSMUSG00000100436ENSMUST00000189807
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000000631 ENSDART00000000670 N/A N/A N/A 2.710±0.00 N/A N/A N/A N/A 0.616±0.00 N/A N/A N/A N/A N/A
ENSDART00000078823 N/A N/A N/A 5.533±1.97 N/A N/A 6.486±5.18 7.507±2.31 1.322±0.00 N/A 1.862±0.00 N/A N/A N/A
ENSDART00000151941 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026383 ENSMUST00000027632 2.582±0.35 N/A 2.529±0.34 N/A 0.875±0.33 0.960±0.16 N/A 10.261±0.94 5.799±2.10 8.716±1.17 0.499±0.09 3.651±0.58 8.771±3.59 N/A
ENSMUST00000052404 1.378±0.58 1.097±0.58 1.111±0.18 3.412±1.05 0.667±0.28 0.726±0.13 0.406±0.12 4.688±0.63 1.136±0.38 5.296±0.18 0.119±0.04 4.088±1.59 1.032±0.44 2.085±1.22
ENSMUST00000163147 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.224±0.00 N/A N/A N/A
ENSMUST00000185467 N/A N/A N/A N/A N/A 1.832±0.10 N/A N/A 6.889±1.30 N/A N/A N/A N/A N/A
ENSMUST00000187194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187239 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189042 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000191046 N/A 0.750±0.19 0.609±0.04 N/A 0.646±0.35 1.431±0.24 N/A 2.088±0.34 1.463±0.81 2.737±0.20 0.171±0.03 1.176±0.29 0.995±0.72 N/A
ENSMUST00000191162 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000026384 ENSMUST00000064091 1.983±0.30 0.938±0.38 0.368±0.01 5.851±0.08 2.067±0.60 0.464±0.08 1.344±0.41 1.378±0.64 0.618±0.42 2.585±0.45 0.760±0.29 1.970±0.85 1.011±0.32 2.156±0.83
ENSMUST00000163179 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000163435 N/A 5.180±1.56 N/A N/A 5.264±1.94 1.667±0.65 N/A 1.009±0.00 0.521±0.10 1.966±0.21 N/A 4.504±2.03 0.874±0.00 4.898±2.23
ENSMUST00000163621 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164086 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164269 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.649±0.00
ENSMUST00000166422 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166624 N/A N/A N/A N/A N/A N/A N/A N/A 0.612±0.00 N/A N/A N/A N/A N/A
ENSMUST00000168303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168808 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000090277 ENSMUST00000163928 N/A N/A 0.509±0.00 N/A N/A N/A 0.164±0.00 N/A 0.223±0.00 0.333±0.07 N/A 1.245±0.53 0.093±0.00 0.276±0.10
ENSMUSG00000091876 ENSMUST00000168653 0.259±0.00 N/A 1.051±0.24 1.078±0.53 N/A N/A 0.484±0.00 0.241±0.03 0.878±0.81 0.308±0.03 N/A 0.608±0.14 0.468±0.40 0.740±0.72
ENSMUSG00000100436 ENSMUST00000189807 N/A N/A 0.103±0.00 N/A N/A N/A N/A 0.180±0.00 0.122±0.07 0.230±0.00 N/A 0.977±0.00 N/A N/A

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