C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001TM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000000631-ENSDARG00000069301 CGP 7955 9:29973993-30072814
GeneTranscriptPositionBiotype
ENSDARG00000000631 (ptpn4a)
protein tyrosine phosphatase, non-receptor type 4, a 		ENSDART00000000670 (ptpn4a-201) 29975916-30036561 protein_coding
ENSDART00000078823 (ptpn4a-001) 29973993-30023957 protein_coding
ENSDART00000151941 (ptpn4a-002) 30036403-30062951 protein_coding
ENSDARG00000069301 (tmem177)
transmembrane protein 177 		ENSDART00000100744 (tmem177-001) 30067529-30072814 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0001TM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026384-ENSMUSG00000036975 CGP 10090 1:119652467-119913208
GeneTranscriptPositionBiotype
ENSMUSG00000026384 (Ptpn4)
protein tyrosine phosphatase, non-receptor type 4 		ENSMUST00000064091 (Ptpn4-001) 119652467-119837613 protein_coding
ENSMUST00000163179 (Ptpn4-010) 119726055-119783502 nonsense_mediated_decay
ENSMUST00000163435 (Ptpn4-002) 119689801-119837347 protein_coding
ENSMUST00000163621 (Ptpn4-006) 119773058-119836999 protein_coding
ENSMUST00000164086 (Ptpn4-011) 119772998-119802442 protein_coding
ENSMUST00000164269 (Ptpn4-008) 119692824-119741436 nonsense_mediated_decay
ENSMUST00000166422 (Ptpn4-005) 119765129-119837071 nonsense_mediated_decay
ENSMUST00000166624 (Ptpn4-003) 119658044-119687637 nonsense_mediated_decay
ENSMUST00000168303 (Ptpn4-004) 119765469-119837071 protein_coding
ENSMUST00000168429 (Ptpn4-009) 119743405-119802422 protein_coding
ENSMUST00000168808 (Ptpn4-007) 119706024-119715993 retained_intron
ENSMUSG00000036975 (Tmem177)
transmembrane protein 177 		ENSMUST00000037906 (Tmem177-001) 119907890-119913208 protein_coding
ENSMUSG00000090277 (Gm8338)
predicted gene 8338 		ENSMUST00000163928 (Gm8338-001) 119817763-119818125 processed_pseudogene
ENSMUSG00000091876 (Gm3851)
predicted gene 3851 		ENSMUST00000168653 (Gm3851-001) 119787769-119788086 processed_pseudogene
ENSMUSG00000100042 (RP23-133I8.2)
predicted gene 29658 		ENSMUST00000185404 (RP23-133I8.2-001) 119874781-119875010 processed_pseudogene
ENSMUSG00000100436 (RP23-274C16.5)
predicted gene 29657 		ENSMUST00000189807 (RP23-274C16.5-001) 119793520-119794229 processed_pseudogene
ENSMUSG00000100636 (RP23-133I8.3)
predicted gene 3551 		ENSMUST00000190750 (RP23-133I8.3-001) 119897461-119898124 processed_pseudogene
ENSMUSG00000101224 (RP23-133I8.4)
predicted gene 28209 		ENSMUST00000187956 (RP23-133I8.4-001) 119903130-119906897 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001TM_0001ENSDARG00000000631ENSDART00000000670ENSDART00000078823ENSDART00000151941ENSDARG00000069301ENSDART00000100744CIL_0001TM_0002ENSMUSG00000026384ENSMUST00000064091ENSMUST00000163179ENSMUST00000163435ENSMUST00000163621ENSMUST00000164086ENSMUST00000164269ENSMUST00000166422ENSMUST00000166624ENSMUST00000168303ENSMUST00000168429ENSMUST00000168808ENSMUSG00000036975ENSMUST00000037906ENSMUSG00000090277ENSMUST00000163928ENSMUSG00000091876ENSMUST00000168653ENSMUSG00000100042ENSMUST00000185404ENSMUSG00000100436ENSMUST00000189807ENSMUSG00000100636ENSMUST00000190750ENSMUSG00000101224ENSMUST00000187956
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001TM_0001ENSDARG00000000631ENSDART00000000670ENSDART00000078823ENSDARG00000069301ENSDART00000100744CIL_0001TM_0002ENSMUSG00000026384ENSMUST00000064091ENSMUST00000163435ENSMUST00000164269ENSMUST00000166624ENSMUSG00000036975ENSMUST00000037906ENSMUSG00000090277ENSMUST00000163928ENSMUSG00000091876ENSMUST00000168653ENSMUSG00000100042ENSMUST00000185404ENSMUSG00000100436ENSMUST00000189807ENSMUSG00000100636ENSMUST00000190750ENSMUSG00000101224ENSMUST00000187956
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000000631 ENSDART00000000670 N/A N/A N/A 2.710±0.00 N/A N/A N/A N/A 0.616±0.00 N/A N/A N/A N/A N/A
ENSDART00000078823 N/A N/A N/A 5.533±1.97 N/A N/A 6.486±5.18 7.507±2.31 1.322±0.00 N/A 1.862±0.00 N/A N/A N/A
ENSDART00000151941 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000069301 ENSDART00000100744 N/A N/A N/A 3.303±1.10 N/A N/A 12.639±5.16 4.013±1.26 0.455±0.00 N/A 4.794±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026384 ENSMUST00000064091 1.983±0.30 0.938±0.38 0.368±0.01 5.851±0.08 2.067±0.60 0.464±0.08 1.344±0.41 1.378±0.64 0.618±0.42 2.585±0.45 0.760±0.29 1.970±0.85 1.011±0.32 2.156±0.83
ENSMUST00000163179 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000163435 N/A 5.180±1.56 N/A N/A 5.264±1.94 1.667±0.65 N/A 1.009±0.00 0.521±0.10 1.966±0.21 N/A 4.504±2.03 0.874±0.00 4.898±2.23
ENSMUST00000163621 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164086 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164269 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.649±0.00
ENSMUST00000166422 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166624 N/A N/A N/A N/A N/A N/A N/A N/A 0.612±0.00 N/A N/A N/A N/A N/A
ENSMUST00000168303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168808 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000036975 ENSMUST00000037906 4.221±0.31 3.546±0.33 1.956±0.10 2.666±1.37 4.042±0.43 2.723±0.31 3.664±0.24 4.013±0.16 2.734±0.47 2.334±0.25 3.192±0.16 3.554±0.87 3.700±1.70 3.143±1.95
ENSMUSG00000090277 ENSMUST00000163928 N/A N/A 0.509±0.00 N/A N/A N/A 0.164±0.00 N/A 0.223±0.00 0.333±0.07 N/A 1.245±0.53 0.093±0.00 0.276±0.10
ENSMUSG00000091876 ENSMUST00000168653 0.259±0.00 N/A 1.051±0.24 1.078±0.53 N/A N/A 0.484±0.00 0.241±0.03 0.878±0.81 0.308±0.03 N/A 0.608±0.14 0.468±0.40 0.740±0.72
ENSMUSG00000100042 ENSMUST00000185404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.065±0.00
ENSMUSG00000100436 ENSMUST00000189807 N/A N/A 0.103±0.00 N/A N/A N/A N/A 0.180±0.00 0.122±0.07 0.230±0.00 N/A 0.977±0.00 N/A N/A
ENSMUSG00000100636 ENSMUST00000190750 0.194±0.08 0.377±0.18 0.038±0.01 0.201±0.00 0.157±0.05 N/A N/A 0.065±0.00 0.041±0.02 0.099±0.01 N/A 0.417±0.40 0.160±0.07 1.065±0.63
ENSMUSG00000101224 ENSMUST00000187956 N/A N/A N/A 0.112±0.04 N/A N/A N/A N/A 0.008±0.00 N/A 0.152±0.05 0.106±0.03 0.144±0.12 0.175±0.06

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