C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vimentin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000026025 VIM 9606 + 10:17228259-17237593 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000224237 VIM-001 17229278-17237593 protein_coding
  ENST00000421459 VIM-008 17230609-17235085 protein_coding
  ENST00000469543 VIM-003 17230004-17237593 nonsense_mediated_decay
  ENST00000478317 VIM-004 17228259-17229950 processed_transcript
  ENST00000478746 VIM-005 17228515-17229870 processed_transcript
  ENST00000485947 VIM-007 17229291-17231093 processed_transcript
  ENST00000487938 VIM-002 17229278-17237593 nonsense_mediated_decay
  ENST00000495528 VIM-009 17233225-17235034 processed_transcript
  ENST00000497849 VIM-006 17228869-17229750 processed_transcript
  ENST00000544301 VIM-201 17228259-17237585 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000224237ENST00000497849
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000224237 1653.490±0.00 807.464±0.00 13.550±0.00 66.746±41.65 836.999±713.07 472.455±406.70 115.625±83.15 133.115±120.00 81.720±42.87 389.673±273.43 153.327±124.75 1352.265±1248.75 929.125±262.61 438.387±290.74
ENST00000497849 N/A N/A 28.907±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00046B CIL_00046B_0002 CGP 10:17142254-17237593
CIL_0005AO CIL_0005AO_0001 CGP 10:17228259-17454330

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001948 IPI glycoprotein binding
GO:0003725 IDA double-stranded RNA binding
GO:0005198 IEA structural molecule activity
GO:0005200 IDA structural constituent of cytoskeleton
GO:0005212 IEA structural constituent of eye lens
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005777 IDA peroxisome
GO:0005829 IDA cytosol
GO:0005856 TAS cytoskeleton
GO:0005882 IDA:IEA intermediate filament
GO:0005886 IDA plasma membrane
GO:0005925 IDA focal adhesion
GO:0006915 TAS apoptotic process
GO:0006921 TAS cellular component disassembly involved in execution phase of apoptosis
GO:0006928 TAS cellular component movement
GO:0008022 IPI protein C-terminus binding
GO:0010628 IEA positive regulation of gene expression
GO:0010977 IEA negative regulation of neuron projection development
GO:0014002 IEA astrocyte development
GO:0016032 IEA viral process
GO:0030049 TAS muscle filament sliding
GO:0031252 IEA cell leading edge
GO:0042802 IPI identical protein binding
GO:0042995 IEA cell projection
GO:0043005 IEA neuron projection
GO:0045103 IEA intermediate filament-based process
GO:0045109 IEA intermediate filament organization
GO:0045111 IDA intermediate filament cytoskeleton
GO:0060020 IEA Bergmann glial cell differentiation
GO:0060395 IEA SMAD protein signal transduction
GO:0070062 IDA extracellular vesicular exosome
GO:0070307 IEA lens fiber cell development
GO:0097110 IPI scaffold protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010008 vim vimentin protein_coding Danio_rerio
ENSDARG00000044501 viml vimentin like protein_coding Danio_rerio
ENSMUSG00000026728 Vim vimentin protein_coding Mus_musculus

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