C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vimentin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000155605 Vim-002 ENSMUSG00000026728 10090 + 2:13574322-13578604 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000155605
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000155605 949.418±326.44 241.101±35.63 187.170±60.61 177.143±132.02 1030.857±198.57 299.508±58.32 149.379±44.93 66.632±3.31 27.025±18.98 719.518±146.48 636.753±142.93 97.441±61.85 31.219±1.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AO CIL_0005AO_0002 CGP 2:13573927-13793808

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000224237 VIM-001 protein_coding Homo_sapiens 0 990
ENST00000478317 VIM-004 processed_transcript Homo_sapiens 0 715
ENST00000478746 VIM-005 processed_transcript Homo_sapiens 0 597
ENST00000485947 VIM-007 processed_transcript Homo_sapiens 0 856
ENST00000487938 VIM-002 nonsense_mediated_decay Homo_sapiens 0 990
ENST00000497849 VIM-006 processed_transcript Homo_sapiens 0 418
ENST00000544301 VIM-201 protein_coding Homo_sapiens 0 990

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