C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vimentin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028062 Vim-001 ENSMUSG00000026728 10090 + 2:13573952-13582826 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028062
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028062 280.031±152.77 244.013±9.78 94.990±59.60 103.454±17.45 47.343±8.92 23.355±13.14 15.401±2.99 21.483±17.70 104.351±30.24 27.445±5.06 131.420±44.10 78.665±14.92 10.748±1.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AO CIL_0005AO_0002 CGP 2:13573927-13793808

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001948 IEA glycoprotein binding
GO:0003725 ISO double-stranded RNA binding
GO:0005198 IMP structural molecule activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005212 IDA structural constituent of eye lens
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005777 IEA peroxisome
GO:0005829 IEA cytosol
GO:0005856 ISO cytoskeleton
GO:0005882 IDA intermediate filament
GO:0005886 IDA plasma membrane
GO:0005925 IEA focal adhesion
GO:0008022 IEA protein C-terminus binding
GO:0010628 IMP positive regulation of gene expression
GO:0010977 IGI negative regulation of neuron projection development
GO:0014002 IGI astrocyte development
GO:0031252 IDA cell leading edge
GO:0042802 IEA identical protein binding
GO:0042995 IDA cell projection
GO:0043005 IDA neuron projection
GO:0045098 TAS type III intermediate filament
GO:0045103 IMP intermediate filament-based process
GO:0045109 IGI intermediate filament organization
GO:0045111 IEA intermediate filament cytoskeleton
GO:0060020 IMP Bergmann glial cell differentiation
GO:0060395 IDA SMAD protein signal transduction
GO:0070062 IEA extracellular vesicular exosome
GO:0070307 IDA lens fiber cell development
GO:0097110 IEA scaffold protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000028270 gfap-001 protein_coding Danio_rerio 8.00001e-42 176
ENSDART00000121861 prph-201 protein_coding Danio_rerio 2e-37 161
ENSDART00000154314 prph-001 protein_coding Danio_rerio 2e-37 161
ENSDART00000065351 krt4-201 protein_coding Danio_rerio 0.000000000000004 88
ENSDART00000012644 krt4-001 protein_coding Danio_rerio 0.000000000000004 88
ENST00000224237 VIM-001 protein_coding Homo_sapiens 0 2274
ENST00000293308 KRT8-002 protein_coding Homo_sapiens 2e-22 111
ENST00000392131 KRT8P40-001 processed_pseudogene Homo_sapiens 0.0000000000002 81
ENST00000414254 KRT8P14-001 processed_pseudogene Homo_sapiens 2e-22 111
ENST00000421459 VIM-008 protein_coding Homo_sapiens 0 632
ENST00000432100 KRT8P30-001 processed_pseudogene Homo_sapiens 7e-18 95
ENST00000450021 KRT8P10-001 processed_pseudogene Homo_sapiens 2e-17 95
ENST00000451609 KRT8P37-001 processed_pseudogene Homo_sapiens 5e-17 94
ENST00000463294 KRT8P13-001 processed_pseudogene Homo_sapiens 2e-19 100
ENST00000469543 VIM-003 nonsense_mediated_decay Homo_sapiens 0 961
ENST00000478317 VIM-004 processed_transcript Homo_sapiens 0 715
ENST00000478746 VIM-005 processed_transcript Homo_sapiens 0 597
ENST00000483942 KRT8P35-001 processed_pseudogene Homo_sapiens 7e-21 106
ENST00000485947 VIM-007 processed_transcript Homo_sapiens 0 856
ENST00000487938 VIM-002 nonsense_mediated_decay Homo_sapiens 0 1783
ENST00000495528 VIM-009 processed_transcript Homo_sapiens 0 545
ENST00000497849 VIM-006 processed_transcript Homo_sapiens 0 418
ENST00000509735 KRT8P4-001 processed_pseudogene Homo_sapiens 9e-20 102
ENST00000515599 KRT8P48-001 processed_pseudogene Homo_sapiens 0.00000000002 75
ENST00000519669 KRT8P3-001 processed_pseudogene Homo_sapiens 3e-19 100
ENST00000533003 KRT8P7-001 processed_pseudogene Homo_sapiens 2e-17 95
ENST00000533985 KRT8P41-001 processed_pseudogene Homo_sapiens 6e-17 94
ENST00000544301 VIM-201 protein_coding Homo_sapiens 0 2274
ENST00000546583 KRT8-005 retained_intron Homo_sapiens 3e-22 111
ENST00000546897 KRT8-003 protein_coding Homo_sapiens 2e-22 111
ENST00000547031 KRT8-020 retained_intron Homo_sapiens 9e-23 111
ENST00000549264 KRT90P-001 unprocessed_pseudogene Homo_sapiens 0.00000000000007 82
ENST00000550170 KRT8-008 retained_intron Homo_sapiens 2e-22 111
ENST00000552150 KRT8-004 protein_coding Homo_sapiens 2e-22 111
ENST00000552551 KRT8-001 protein_coding Homo_sapiens 2e-22 111
ENST00000556193 KRT8P2-001 processed_pseudogene Homo_sapiens 1e-17 95
ENST00000577607 KRT8P34-001 processed_pseudogene Homo_sapiens 5e-16 90
ENST00000592443 KRT8P5-001 processed_pseudogene Homo_sapiens 7e-21 106
ENST00000604166 KRT8P49-001 processed_pseudogene Homo_sapiens 7e-16 90

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