C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vimentin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000148248 Vim-004 ENSMUSG00000026728 10090 + 2:13579384-13582478 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastOvaryENSMUST00000148248
Transcript ID Breast Ovary
ENSMUST00000148248 290.438±0.00 131.645±1.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AO CIL_0005AO_0002 CGP 2:13573927-13793808

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000028270 gfap-001 protein_coding Danio_rerio 3e-40 169
ENSDART00000121861 prph-201 protein_coding Danio_rerio 3e-35 152
ENSDART00000154314 prph-001 protein_coding Danio_rerio 3e-35 152
ENSDART00000065351 krt4-201 protein_coding Danio_rerio 9e-16 88
ENSDART00000012644 krt4-001 protein_coding Danio_rerio 9e-16 88
ENST00000224237 VIM-001 protein_coding Homo_sapiens 0 697
ENST00000293308 KRT8-002 protein_coding Homo_sapiens 2e-22 111
ENST00000392131 KRT8P40-001 processed_pseudogene Homo_sapiens 0.0000000000002 81
ENST00000414254 KRT8P14-001 processed_pseudogene Homo_sapiens 2e-22 111
ENST00000421459 VIM-008 protein_coding Homo_sapiens 0 191
ENST00000432100 KRT8P30-001 processed_pseudogene Homo_sapiens 7e-18 95
ENST00000450021 KRT8P10-001 processed_pseudogene Homo_sapiens 2e-17 95
ENST00000451609 KRT8P37-001 processed_pseudogene Homo_sapiens 5e-17 94
ENST00000463294 KRT8P13-001 processed_pseudogene Homo_sapiens 2e-19 100
ENST00000469543 VIM-003 nonsense_mediated_decay Homo_sapiens 0 520
ENST00000483942 KRT8P35-001 processed_pseudogene Homo_sapiens 7e-21 106
ENST00000487938 VIM-002 nonsense_mediated_decay Homo_sapiens 0 579
ENST00000495528 VIM-009 processed_transcript Homo_sapiens 0 191
ENST00000509735 KRT8P4-001 processed_pseudogene Homo_sapiens 9e-20 102
ENST00000515599 KRT8P48-001 processed_pseudogene Homo_sapiens 0.00000000002 75
ENST00000519669 KRT8P3-001 processed_pseudogene Homo_sapiens 3e-19 100
ENST00000533003 KRT8P7-001 processed_pseudogene Homo_sapiens 2e-17 95
ENST00000533985 KRT8P41-001 processed_pseudogene Homo_sapiens 6e-17 94
ENST00000544301 VIM-201 protein_coding Homo_sapiens 0 697
ENST00000546583 KRT8-005 retained_intron Homo_sapiens 3e-22 111
ENST00000546897 KRT8-003 protein_coding Homo_sapiens 2e-22 111
ENST00000547031 KRT8-020 retained_intron Homo_sapiens 9e-23 111
ENST00000549264 KRT90P-001 unprocessed_pseudogene Homo_sapiens 0.00000000000007 82
ENST00000550170 KRT8-008 retained_intron Homo_sapiens 2e-22 111
ENST00000552150 KRT8-004 protein_coding Homo_sapiens 2e-22 111
ENST00000552551 KRT8-001 protein_coding Homo_sapiens 2e-22 111
ENST00000556193 KRT8P2-001 processed_pseudogene Homo_sapiens 1e-17 95
ENST00000577607 KRT8P34-001 processed_pseudogene Homo_sapiens 5e-16 90
ENST00000592443 KRT8P5-001 processed_pseudogene Homo_sapiens 7e-21 106
ENST00000604166 KRT8P49-001 processed_pseudogene Homo_sapiens 7e-16 90

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