C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: prenyl (solanesyl) diphosphate synthase, subunit 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026784 Pdss1 10090 + 2:22895522-22940266 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000053729 Pdss1-001 22895522-22940266 protein_coding
  ENSMUST00000135621 Pdss1-005 22895619-22901830 nonsense_mediated_decay
  ENSMUST00000139472 Pdss1-003 22934123-22940255 retained_intron
  ENSMUST00000141215 Pdss1-004 22896048-22906824 protein_coding
  ENSMUST00000148072 Pdss1-006 22895522-22912699 processed_transcript
  ENSMUST00000149229 Pdss1-007 22935559-22940242 nonsense_mediated_decay
  ENSMUST00000152170 Pdss1-002 22895595-22916213 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartKidneyLiverMusclePlacentaENSMUST00000053729ENSMUST00000139472ENSMUST00000148072
Transcript ID Adrenal Brain Colon Heart Kidney Liver Muscle Placenta
ENSMUST00000053729 N/A N/A 11.662±2.29 7.507±0.68 6.958±1.09 14.044±5.42 4.078±0.71 11.827±3.72
ENSMUST00000139472 N/A 8.322±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000148072 14.472±3.41 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000R4 CIL_0000R4_0002 CGP 2:22774094-22940266
CIL_0000R7 CIL_0000R7_0002 CGP 2:22895522-23040241

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000010 IDA trans-hexaprenyltranstransferase activity
GO:0005739 IDA mitochondrion
GO:0006744 IEA ubiquinone biosynthetic process
GO:0008152 IDA metabolic process
GO:0008299 IDA isoprenoid biosynthetic process
GO:0046872 IEA metal ion binding
GO:0046982 IDA protein heterodimerization activity
GO:0050347 IDA trans-octaprenyltranstransferase activity
GO:0051290 IPI protein heterotetramerization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017910 pdss1 prenyl (decaprenyl) diphosphate synthase, subunit 1 protein_coding Danio_rerio
ENSG00000148459 PDSS1 prenyl (decaprenyl) diphosphate synthase, subunit 1 protein_coding Homo_sapiens

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