C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000R4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000077420-ENSG00000148459 CGP 9606 10:26438203-26746798
GeneTranscriptPositionBiotype
ENSG00000077420 (APBB1IP)
amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein 		ENST00000356785 (APBB1IP-001) 26438425-26501938 protein_coding
ENST00000376236 (APBB1IP-003) 26438203-26567803 protein_coding
ENST00000493857 (APBB1IP-002) 26561943-26567226 processed_transcript
ENSG00000148459 (PDSS1)
prenyl (decaprenyl) diphosphate synthase, subunit 1 		ENST00000376215 (PDSS1-001) 26697659-26746798 protein_coding
ENST00000470978 (PDSS1-003) 26734651-26746782 processed_transcript
ENST00000473224 (PDSS1-004) 26705308-26724019 processed_transcript
ENST00000491711 (PDSS1-002) 26720343-26746541 nonsense_mediated_decay
ENSG00000227932 (RP13-16H11.2)
 ENST00000446557 (RP13-16H11.2-001) 26664206-26676159 lincRNA
ENSG00000231976 (LINC00202-2)
long intergenic non-protein coding RNA 202-2 		ENST00000413288 (LINC00202-2-003) 26649332-26653111 lincRNA
ENST00000423917 (LINC00202-2-001) 26647986-26653446 lincRNA
ENST00000434458 (LINC00202-2-002) 26648100-26653454 lincRNA
ENST00000612040 (LINC00202-2-201) 26649557-26653170 lincRNA
ENSG00000233261 (LINC00264)
long intergenic non-protein coding RNA 264 		ENST00000412114 (LINC00264-001) 26589865-26594330 lincRNA
ENSG00000234296 (RP13-16H11.7)
 ENST00000454991 (RP13-16H11.7-001) 26643228-26645016 lincRNA
ENSG00000234788 (HSPA8P3)
heat shock 70kDa protein 8 pseudogene 3 		ENST00000449300 (HSPA8P3-001) 26714622-26715832 processed_pseudogene
ENSG00000235843 (RP13-16H11.5)
 ENST00000458171 (RP13-16H11.5-001) 26717635-26718778 antisense
ENSG00000236894 (RP11-128B16.3)
 ENST00000455612 (RP11-128B16.3-002) 26577676-26579095 lincRNA
ENSG00000279212 (RP13-16H11.8)
 ENST00000623958 (RP13-16H11.8-001) 26695091-26697625 TEC
CIL_0000R4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026786-ENSMUSG00000026784 CGP 10090 2:22774094-22940266
GeneTranscriptPositionBiotype
ENSMUSG00000026784 (Pdss1)
prenyl (solanesyl) diphosphate synthase, subunit 1 		ENSMUST00000053729 (Pdss1-001) 22895522-22940266 protein_coding
ENSMUST00000135621 (Pdss1-005) 22895619-22901830 nonsense_mediated_decay
ENSMUST00000139472 (Pdss1-003) 22934123-22940255 retained_intron
ENSMUST00000141215 (Pdss1-004) 22896048-22906824 protein_coding
ENSMUST00000148072 (Pdss1-006) 22895522-22912699 processed_transcript
ENSMUST00000149229 (Pdss1-007) 22935559-22940242 nonsense_mediated_decay
ENSMUST00000152170 (Pdss1-002) 22895595-22916213 protein_coding
ENSMUSG00000026786 (Apbb1ip)
amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein 		ENSMUST00000014290 (Apbb1ip-001) 22774094-22875653 protein_coding
ENSMUST00000131195 (Apbb1ip-002) 22774094-22836145 processed_transcript
ENSMUST00000132993 (Apbb1ip-004) 22774445-22828586 retained_intron
ENSMUST00000148315 (Apbb1ip-003) 22774390-22856086 processed_transcript
ENSMUSG00000058835 (Abi1)
abl-interactor 1 		ENSMUST00000078977 (Abi1-009) 22940369-23040230 protein_coding
ENSMUST00000091394 (Abi1-005) 22940364-23040137 protein_coding
ENSMUST00000093171 (Abi1-010) 22940892-23040140 protein_coding
ENSMUST00000114544 (Abi1-006) 22940369-23040185 protein_coding
ENSMUST00000123948 (Abi1-004) 22940308-23040122 protein_coding
ENSMUST00000126112 (Abi1-003) 22940073-23040195 protein_coding
ENSMUST00000135308 (Abi1-015) 22941808-22947210 retained_intron
ENSMUST00000139038 (Abi1-011) 22940364-23040187 protein_coding
ENSMUST00000140164 (Abi1-001) 22940073-23040241 protein_coding
ENSMUST00000148294 (Abi1-014) 22941812-22950302 retained_intron
ENSMUST00000149719 (Abi1-002) 22940086-23040241 protein_coding
ENSMUST00000153931 (Abi1-007) 22940364-23040104 protein_coding
ENSMUST00000154162 (Abi1-012) 22950226-22962611 retained_intron
ENSMUST00000156344 (Abi1-013) 22946683-22960852 retained_intron
ENSMUST00000178908 (Abi1-201) 22941233-23040219 protein_coding
ENSMUSG00000081861 (Gm14441)
predicted gene 14441 		ENSMUST00000121960 (Gm14441-001) 22913293-22913832 processed_pseudogene
ENSMUSG00000084625 (Gm25544)
predicted gene, 25544 		ENSMUST00000122676 (Gm25544-201) 22902388-22902507 snoRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000R4_0001ENSG00000077420ENST00000356785ENST00000376236ENST00000493857ENSG00000148459ENST00000376215ENST00000470978ENST00000473224ENST00000491711ENSG00000227932ENST00000446557ENSG00000231976ENST00000413288ENST00000423917ENST00000434458ENST00000612040ENSG00000233261ENST00000412114ENSG00000234296ENST00000454991ENSG00000234788ENST00000449300ENSG00000235843ENST00000458171ENSG00000236894ENST00000455612ENSG00000279212ENST00000623958CIL_0000R4_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000R4_0001ENSG00000077420ENST00000356785ENST00000376236ENSG00000148459ENST00000376215ENST00000491711ENSG00000227932ENST00000446557ENSG00000231976ENST00000413288ENST00000423917ENST00000434458ENST00000612040ENSG00000233261ENST00000412114ENSG00000234296ENST00000454991ENSG00000234788ENST00000449300ENSG00000235843ENST00000458171ENSG00000236894ENST00000455612ENSG00000279212ENST00000623958CIL_0000R4_0002ENSMUSG00000026784ENSMUST00000053729ENSMUST00000139472ENSMUST00000148072ENSMUSG00000026786ENSMUST00000014290ENSMUST00000131195ENSMUST00000132993ENSMUST00000148315ENSMUSG00000058835ENSMUST00000078977ENSMUST00000091394ENSMUST00000093171ENSMUST00000114544ENSMUST00000126112ENSMUST00000139038ENSMUST00000140164ENSMUST00000149719ENSMUST00000153931ENSMUST00000154162ENSMUST00000156344ENSMUST00000178908ENSMUSG00000081861ENSMUST00000121960ENSMUSG00000084625ENSMUST00000122676
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000077420 ENST00000356785 N/A N/A 0.601±0.00 N/A N/A 0.615±0.00 0.087±0.00 N/A N/A 0.846±0.00 0.050±0.00 N/A N/A N/A
ENST00000376236 11.311±0.00 13.474±0.00 0.299±0.00 2.515±1.37 17.428±15.58 2.237±0.84 0.855±0.68 3.198±0.07 9.205±8.71 4.477±1.35 0.375±0.22 2.316±1.08 6.161±0.47 1.205±0.95
ENST00000493857 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000148459 ENST00000376215 N/A N/A N/A N/A N/A N/A N/A 2.314±0.00 2.416±0.00 N/A 2.281±0.00 9.984±0.00 N/A N/A
ENST00000470978 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473224 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491711 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.146±0.00 N/A N/A N/A
ENSG00000227932 ENST00000446557 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.150±1.02 N/A 0.372±0.17
ENSG00000231976 ENST00000413288 N/A N/A N/A 0.025±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.164±0.00 N/A
ENST00000423917 N/A 0.037±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.956±0.00
ENST00000434458 N/A N/A N/A 0.077±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.094±0.00 0.174±0.00 N/A
ENSG00000233261 ENST00000412114 0.016±0.00 0.609±0.00 N/A 0.038±0.02 0.112±0.00 N/A N/A 0.048±0.00 N/A N/A N/A 0.083±0.04 0.045±0.00 9.164±7.56
ENSG00000234296 ENST00000454991 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.184±0.00 N/A
ENSG00000234788 ENST00000449300 N/A 0.159±0.00 0.493±0.00 0.342±0.00 N/A N/A 0.029±0.00 N/A N/A N/A N/A 0.079±0.04 0.040±0.00 N/A
ENSG00000235843 ENST00000458171 0.020±0.00 0.074±0.00 N/A 0.093±0.00 0.146±0.10 N/A 0.036±0.00 N/A N/A 0.100±0.00 N/A 0.098±0.08 N/A N/A
ENSG00000236894 ENST00000455612 N/A 0.106±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.209±0.00 N/A N/A 0.623±0.15
ENSG00000279212 ENST00000623958 0.030±0.00 0.100±0.00 N/A 0.038±0.01 0.126±0.00 0.046±0.00 0.024±0.00 0.120±0.00 0.039±0.00 0.143±0.00 0.005±0.00 0.012±0.00 N/A 0.384±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026784 ENSMUST00000053729 N/A N/A N/A N/A N/A 11.662±2.29 7.507±0.68 6.958±1.09 14.044±5.42 N/A 4.078±0.71 N/A 11.827±3.72 N/A
ENSMUST00000135621 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139472 N/A N/A N/A 8.322±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141215 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148072 N/A 14.472±3.41 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149229 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152170 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000026786 ENSMUST00000014290 2.876±0.46 0.329±0.11 2.146±0.44 0.586±0.50 3.604±1.40 0.827±0.23 0.560±0.22 0.405±0.23 3.190±3.71 1.801±0.22 0.443±0.31 0.830±0.86 2.890±2.15 1.112±0.31
ENSMUST00000131195 2.606±1.23 0.209±0.10 N/A N/A 3.745±1.23 0.487±0.07 0.382±0.03 0.271±0.11 0.190±0.04 1.603±0.53 N/A 0.501±0.20 N/A 0.580±0.17
ENSMUST00000132993 N/A 0.349±0.00 N/A N/A N/A N/A N/A 0.070±0.01 0.078±0.00 N/A N/A N/A N/A N/A
ENSMUST00000148315 N/A 0.234±0.00 N/A N/A N/A N/A N/A 0.095±0.04 0.063±0.00 N/A 0.022±0.00 0.135±0.01 N/A N/A
ENSMUSG00000058835 ENSMUST00000078977 N/A N/A N/A 7.191±1.32 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000091394 7.132±1.07 5.072±0.72 13.284±0.08 9.516±1.17 5.549±1.35 N/A 4.497±0.42 N/A 4.364±0.86 11.689±2.48 2.716±0.50 7.325±1.26 N/A 1.659±0.01
ENSMUST00000093171 6.868±0.86 N/A N/A 8.347±1.06 4.805±0.98 7.040±0.26 N/A 5.185±0.92 4.151±0.00 8.082±0.00 N/A 6.384±0.53 4.389±0.00 2.834±0.37
ENSMUST00000114544 N/A N/A 7.397±0.00 N/A 7.123±2.64 11.533±1.66 N/A N/A 9.568±3.82 8.630±0.46 N/A 6.620±0.50 9.071±3.07 N/A
ENSMUST00000123948 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126112 N/A 3.767±0.00 9.971±0.22 5.885±0.46 N/A N/A N/A 4.451±0.53 4.711±1.17 6.177±0.00 1.304±0.15 10.663±2.84 7.166±0.36 N/A
ENSMUST00000135308 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139038 N/A N/A N/A 7.678±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.643±0.00
ENSMUST00000140164 7.698±1.13 5.020±0.91 N/A N/A 5.621±0.08 9.135±1.37 2.184±0.00 5.598±0.57 6.071±1.23 7.891±0.44 N/A 6.410±1.10 6.329±0.89 2.126±0.26
ENSMUST00000148294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149719 N/A N/A N/A N/A N/A 9.779±2.32 N/A N/A 4.459±0.92 N/A N/A N/A N/A N/A
ENSMUST00000153931 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.103±0.00 N/A N/A
ENSMUST00000154162 N/A 11.348±1.22 N/A N/A 13.772±0.00 N/A N/A N/A N/A N/A N/A 35.285±8.68 N/A N/A
ENSMUST00000156344 N/A 17.702±3.45 N/A 101.594±0.00 23.072±2.96 47.551±15.15 N/A 16.068±1.24 16.346±2.08 26.014±0.00 N/A 38.285±17.61 60.328±0.00 N/A
ENSMUST00000178908 10.536±1.90 6.412±1.18 N/A 13.088±0.00 5.288±1.04 11.460±0.00 3.559±0.41 3.840±0.25 4.721±0.37 13.755±4.90 1.741±0.11 6.721±0.32 14.684±2.62 3.100±0.51
ENSMUSG00000081861 ENSMUST00000121960 0.397±0.04 0.288±0.02 0.061±0.02 0.478±0.11 0.247±0.09 0.244±0.02 0.144±0.05 0.402±0.25 0.199±0.09 0.154±0.02 0.087±0.03 0.311±0.14 0.143±0.04 N/A
ENSMUSG00000084625 ENSMUST00000122676 N/A N/A N/A 8.812±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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