C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: prenyl (solanesyl) diphosphate synthase, subunit 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000053729 Pdss1-001 ENSMUSG00000026784 10090 + 2:22895522-22940266 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartKidneyLiverMusclePlacentaENSMUST00000053729
Transcript ID Colon Heart Kidney Liver Muscle Placenta
ENSMUST00000053729 11.662±2.29 7.507±0.68 6.958±1.09 14.044±5.42 4.078±0.71 11.827±3.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000R4 CIL_0000R4_0002 CGP 2:22774094-22940266
CIL_0000R7 CIL_0000R7_0002 CGP 2:22895522-23040241

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000010 IDA trans-hexaprenyltranstransferase activity
GO:0005739 IDA mitochondrion
GO:0006744 IEA ubiquinone biosynthetic process
GO:0008299 IDA isoprenoid biosynthetic process
GO:0046872 IEA metal ion binding
GO:0046982 IDA protein heterodimerization activity
GO:0050347 IDA trans-octaprenyltranstransferase activity
GO:0051290 IPI protein heterotetramerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000346832 ABI1-201 protein_coding Homo_sapiens 0 200
ENST00000359188 ABI1-007 protein_coding Homo_sapiens 0 200
ENST00000376137 ABI1-202 protein_coding Homo_sapiens 0 200
ENST00000376138 ABI1-001 protein_coding Homo_sapiens 0 200
ENST00000376139 ABI1-009 protein_coding Homo_sapiens 0 200
ENST00000376142 ABI1-005 protein_coding Homo_sapiens 0 200
ENST00000376160 ABI1-004 protein_coding Homo_sapiens 0 200
ENST00000376166 ABI1-003 protein_coding Homo_sapiens 0 200
ENST00000376170 ABI1-002 protein_coding Homo_sapiens 0 200
ENST00000376215 PDSS1-001 protein_coding Homo_sapiens 0 1570
ENST00000422953 PDSS1P1-001 processed_pseudogene Homo_sapiens 0 1035
ENST00000470978 PDSS1-003 processed_transcript Homo_sapiens 0 797
ENST00000473224 PDSS1-004 processed_transcript Homo_sapiens 0 377
ENST00000490841 ABI1-203 protein_coding Homo_sapiens 0 200
ENST00000491711 PDSS1-002 nonsense_mediated_decay Homo_sapiens 0 592
ENST00000536334 ABI1-204 protein_coding Homo_sapiens 0 200

Loading