C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: serologically defined colon cancer antigen 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026927 Sdccag3 10090 - 2:26382802-26389316 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028293 Sdccag3-001 26382802-26389304 protein_coding
  ENSMUST00000077983 Sdccag3-003 26382802-26389297 protein_coding
  ENSMUST00000114100 Sdccag3-005 26382802-26389291 protein_coding
  ENSMUST00000114102 Sdccag3-002 26382802-26389316 protein_coding
  ENSMUST00000130954 Sdccag3-006 26386655-26389283 processed_transcript
  ENSMUST00000132574 Sdccag3-007 26382803-26387581 processed_transcript
  ENSMUST00000133737 Sdccag3-004 26386655-26389306 processed_transcript
  ENSMUST00000134737 Sdccag3-013 26383555-26385213 processed_transcript
  ENSMUST00000136972 Sdccag3-012 26383564-26385609 processed_transcript
  ENSMUST00000137814 Sdccag3-009 26387126-26389267 processed_transcript
  ENSMUST00000139738 Sdccag3-011 26387105-26388694 protein_coding
  ENSMUST00000140074 Sdccag3-010 26387556-26389165 processed_transcript
  ENSMUST00000140115 Sdccag3-008 26387013-26389295 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028293ENSMUST00000077983ENSMUST00000114100ENSMUST00000114102ENSMUST00000132574ENSMUST00000133737ENSMUST00000134737ENSMUST00000137814
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028293 11.912±2.55 21.640±2.69 6.398±0.00 N/A 14.382±5.94 22.541±5.37 5.907±1.71 22.320±0.96 11.151±5.67 15.236±3.26 1.847±0.42 16.813±4.63 8.368±2.10 N/A
ENSMUST00000077983 22.601±0.51 N/A 22.573±5.35 21.423±9.22 10.495±2.05 N/A 12.634±1.93 20.001±3.29 13.826±6.93 13.847±6.35 3.586±1.31 20.624±5.50 13.323±4.78 54.404±28.16
ENSMUST00000114100 N/A 23.804±6.71 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 36.356±5.61
ENSMUST00000114102 N/A 33.749±18.00 N/A N/A 12.407±3.35 12.628±0.00 3.679±0.00 N/A 2.803±0.00 7.833±1.62 N/A 16.009±4.43 N/A 123.675±19.71
ENSMUST00000132574 8.565±1.39 N/A 15.171±4.18 22.227±6.72 8.245±2.68 N/A 5.402±0.00 N/A 5.292±1.14 8.820±0.25 1.676±0.51 20.058±6.77 8.540±3.65 N/A
ENSMUST00000133737 N/A 25.496±5.09 N/A 14.036±0.00 N/A 10.464±0.00 N/A N/A N/A N/A N/A 23.531±0.00 9.576±0.00 N/A
ENSMUST00000134737 N/A N/A N/A 48.578±18.89 N/A N/A N/A N/A N/A N/A N/A 32.402±0.00 N/A N/A
ENSMUST00000137814 N/A 31.157±7.82 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002E3 CIL_0002E3_0003 CGP 2:26362765-26389316
CIL_00034J CIL_00034J_0002 CGP 2:26382802-26397122

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000095515 sdccag3 serologically defined colon cancer antigen 3 protein_coding Danio_rerio
ENSG00000165689 SDCCAG3 serologically defined colon cancer antigen 3 protein_coding Homo_sapiens

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