C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nebulin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028320 Neb-002 ENSMUSG00000026950 10090 - 2:52136662-52223737 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028320
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028320 0.075±0.03 0.061±0.02 0.238±0.09 8.571±7.36 0.031±0.00 0.119±0.00 0.165±0.21 0.287±0.18 0.500±0.66 157.648±54.92 0.428±0.21 0.065±0.03 0.068±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003S6 CIL_0003S6_0003 CGP 2:52072837-52338798
CIL_0003RZ CIL_0003RZ_0003 CGP 2:52136647-52424901

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005865 TAS striated muscle thin filament
GO:0030018 IDA Z disc
GO:0030832 TAS regulation of actin filament length
GO:0043234 ISO protein complex
GO:0043292 IDA contractile fiber
GO:0045214 TAS sarcomere organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000143888 neb-001 protein_coding Danio_rerio 0 503
ENSDART00000140686 neb-004 processed_transcript Danio_rerio 0 276
ENSDART00000142585 neb-002 protein_coding Danio_rerio 0 272
ENSDART00000137045 neb-003 processed_transcript Danio_rerio 0 193
ENSDART00000101711 neb-201 protein_coding Danio_rerio 1e-20 108
ENSDART00000146486 neb-007 protein_coding Danio_rerio 1e-20 108
ENST00000172853 NEB-201 protein_coding Homo_sapiens 0 9236
ENST00000397337 NEB-004 protein_coding Homo_sapiens 0 1214
ENST00000397345 NEB-202 protein_coding Homo_sapiens 0 6551
ENST00000409198 NEB-001 protein_coding Homo_sapiens 0 9236
ENST00000413693 NEB-002 protein_coding Homo_sapiens 0 10950
ENST00000420924 NEB-006 protein_coding Homo_sapiens 0 758
ENST00000421461 NEB-014 protein_coding Homo_sapiens 0 784
ENST00000424585 NEB-013 protein_coding Homo_sapiens 0 782
ENST00000427231 NEB-203 protein_coding Homo_sapiens 0 10130
ENST00000434685 NEB-003 protein_coding Homo_sapiens 0 1029
ENST00000483418 NEB-011 retained_intron Homo_sapiens 0 514
ENST00000497809 NEB-007 retained_intron Homo_sapiens 0 396
ENST00000498015 NEB-016 processed_transcript Homo_sapiens 0 403
ENST00000603639 NEB-017 protein_coding Homo_sapiens 0 6551
ENST00000604864 NEB-018 protein_coding Homo_sapiens 0 10130
ENST00000618972 NEB-204 protein_coding Homo_sapiens 0 6728

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