C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: elongation protein 4 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027167 Elp4 10090 - 2:105701027-105904564 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028588 Elp4-003 105731448-105865982 protein_coding
  ENSMUST00000122965 Elp4-001 105701027-105904564 protein_coding
  ENSMUST00000148441 Elp4-002 105866070-105904483 processed_transcript
  ENSMUST00000152272 Elp4-004 105792079-105814322 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028588ENSMUST00000122965ENSMUST00000148441ENSMUST00000152272
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028588 N/A N/A 1.877±0.00 N/A 1.985±0.00 N/A N/A N/A N/A N/A 1.053±0.25 2.863±0.13 1.926±0.82 N/A
ENSMUST00000122965 3.092±0.56 2.818±1.00 2.415±0.16 3.448±2.28 2.484±1.02 2.565±0.48 1.451±0.31 2.134±0.24 3.300±0.99 2.421±0.27 0.682±0.23 3.480±1.88 1.245±0.64 1.946±0.86
ENSMUST00000148441 N/A 9.826±0.00 N/A 13.705±0.00 4.418±1.50 3.004±0.36 N/A N/A 4.268±0.97 3.194±0.00 N/A 8.239±3.90 N/A 10.865±0.00
ENSMUST00000152272 N/A N/A 2.390±0.00 N/A N/A N/A 1.574±0.00 N/A 4.964±0.76 N/A N/A N/A N/A 1.441±0.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096J CIL_00096J_0002 VISTA 2:105147292-105748402
CIL_0007PY CIL_0007PY_0002 VISTA 2:105215855-105816711
CIL_0007JA CIL_0007JA_0005 UCNEbase 2:105301487-106575818
CIL_000914 CIL_000914_0002 VISTA 2:105311041-105914025
CIL_0007XG CIL_0007XG_0002 VISTA 2:105389599-105991449
CIL_0008UP CIL_0008UP_0002 VISTA 2:105418757-106020536
CIL_0007UQ CIL_0007UQ_0002 VISTA 2:105478530-106080039
CIL_0008KI CIL_0008KI_0002 VISTA 2:105533387-106134697
CIL_00096G CIL_00096G_0002 VISTA 2:105613336-106214486
CIL_0000ZD CIL_0000ZD_0002 CGP 2:105668900-105904564
CIL_0000ZE CIL_0000ZE_0002 CGP 2:105701027-105965558

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 ISS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0008023 ISS transcription elongation factor complex
GO:0008607 ISS phosphorylase kinase regulator activity
GO:0033588 IEA Elongator holoenzyme complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008852 elp4 elongation protein 4 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000109911 ELP4 elongator acetyltransferase complex subunit 4 protein_coding Homo_sapiens

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