C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007PY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs855 VISTA 9606 11:31667627-32268476
GeneTranscriptPositionBiotype
ENSG00000049449 (RCN1)
reticulocalbin 1, EF-hand calcium binding domain 		ENST00000054950 (RCN1-002) 32090904-32105755 protein_coding
ENST00000506388 (RCN1-011) 31816566-31887043 processed_transcript
ENST00000527337 (RCN1-007) 32100547-32104684 nonsense_mediated_decay
ENST00000528630 (RCN1-008) 32104386-32105532 protein_coding
ENST00000530146 (RCN1-012) 31885774-31917941 processed_transcript
ENST00000530348 (RCN1-013) 31812391-32100594 protein_coding
ENST00000531345 (RCN1-004) 32101995-32105531 retained_intron
ENST00000532474 (RCN1-006) 32100532-32104602 processed_transcript
ENST00000532721 (RCN1-005) 32091610-32098458 protein_coding
ENST00000532942 (RCN1-001) 31816384-32104665 protein_coding
ENST00000533898 (RCN1-003) 32096534-32105536 retained_intron
ENSG00000109911 (ELP4)
elongator acetyltransferase complex subunit 4 		ENST00000350638 (ELP4-001) 31509750-31783998 protein_coding
ENST00000379163 (ELP4-004) 31509770-31783771 protein_coding
ENST00000395934 (ELP4-003) 31509778-31783775 protein_coding
ENST00000474374 (ELP4-002) 31509771-31650221 nonsense_mediated_decay
ENSG00000227160 (THEM7P)
thioesterase superfamily member 7, pseudogene 		ENST00000419556 (THEM7P-001) 32112049-32254395 unitary_pseudogene
ENST00000525689 (THEM7P-002) 32229724-32343409 processed_transcript
ENSG00000228061 (Z83001.1)
 ENST00000429821 (Z83001.1-002) 31637328-31767953 antisense
ENST00000434742 (Z83001.1-001) 31727785-31767825 antisense
ENST00000454509 (Z83001.1-003) 31689182-31767825 antisense
ENSG00000254584 (RP1-17K7.2)
 ENST00000531627 (RP1-17K7.2-002) 32040106-32041248 antisense
ENST00000531962 (RP1-17K7.2-001) 32035981-32041318 antisense
ENSG00000254627 (RP1-17K7.1)
 ENST00000533832 (RP1-17K7.1-001) 32064912-32072173 sense_intronic
ENSG00000254836 (RP1-17K7.3)
 ENST00000525382 (RP1-17K7.3-001) 32052843-32053260 antisense
ENSG00000255375 (RP1-65P5.5)
 ENST00000525133 (RP1-65P5.5-001) 32132699-32143579 lincRNA
ENSG00000255490 (EIF4A2P5)
eukaryotic translation initiation factor 4A2 pseudogene 5 		ENST00000529914 (EIF4A2P5-001) 32085111-32085712 processed_pseudogene
CIL_0007PY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs855 VISTA 10090 2:105215855-105816711
GeneTranscriptPositionBiotype
ENSMUSG00000005973 (Rcn1)
reticulocalbin 1 		ENSMUST00000006128 (Rcn1-001) 105386291-105399319 protein_coding
ENSMUST00000127019 (Rcn1-002) 105386929-105395348 retained_intron
ENSMUSG00000027167 (Elp4)
elongation protein 4 homolog (S. cerevisiae) 		ENSMUST00000028588 (Elp4-003) 105731448-105865982 protein_coding
ENSMUST00000122965 (Elp4-001) 105701027-105904564 protein_coding
ENSMUST00000148441 (Elp4-002) 105866070-105904483 processed_transcript
ENSMUST00000152272 (Elp4-004) 105792079-105814322 retained_intron
ENSMUSG00000055312 (Them7)
thioesterase superfamily member 7 		ENSMUST00000068813 (Them7-001) 105224320-105379796 protein_coding
ENSMUST00000131060 (Them7-002) 105224342-105379035 processed_transcript
ENSMUSG00000080859 (Rpl10-ps1)
ribosomal protein L10, pseudogene 1 		ENSMUST00000119438 (Rpl10-ps1-001) 105554201-105554845 transcribed_processed_pseudogene
ENSMUSG00000084870 (Gm13954)
predicted gene 13954 		ENSMUST00000123441 (Gm13954-001) 105708999-105710098 antisense
ENSMUSG00000086029 (Pax6os1)
paired box 6 opposite strand 1 		ENSMUST00000126948 (Pax6os1-002) 105536939-105670280 antisense
ENSMUST00000149133 (Pax6os1-001) 105536080-105670330 antisense
ENSMUSG00000086764 (4930527A07Rik)
RIKEN cDNA 4930527A07 gene 		ENSMUST00000130677 (4930527A07Rik-001) 105476501-105477357 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007PY_0001ENSG00000049449ENST00000054950ENST00000506388ENST00000527337ENST00000528630ENST00000530146ENST00000530348ENST00000531345ENST00000532474ENST00000532721ENST00000532942ENST00000533898ENSG00000109911ENST00000350638ENST00000379163ENST00000395934ENST00000474374ENSG00000227160ENST00000419556ENST00000525689ENSG00000228061ENST00000429821ENST00000434742ENST00000454509ENSG00000254584ENST00000531627ENST00000531962ENSG00000254627ENST00000533832ENSG00000254836ENST00000525382ENSG00000255375ENST00000525133ENSG00000255490ENST00000529914CIL_0007PY_0002ENSMUSG00000005973ENSMUST00000006128ENSMUST00000127019ENSMUSG00000027167ENSMUST00000028588ENSMUST00000122965ENSMUST00000148441ENSMUST00000152272ENSMUSG00000055312ENSMUST00000068813ENSMUST00000131060ENSMUSG00000080859ENSMUST00000119438ENSMUSG00000084870ENSMUST00000123441ENSMUSG00000086029ENSMUST00000126948ENSMUST00000149133ENSMUSG00000086764ENSMUST00000130677
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007PY_0001ENSG00000049449ENST00000054950ENST00000528630ENST00000530348ENST00000532721ENST00000532942ENST00000533898ENSG00000109911ENST00000350638ENST00000379163ENST00000395934ENST00000474374ENSG00000227160ENST00000419556ENST00000525689ENSG00000228061ENST00000429821ENST00000434742ENST00000454509ENSG00000254584ENST00000531627ENST00000531962ENSG00000254627ENST00000533832ENSG00000254836ENST00000525382ENSG00000255375ENST00000525133ENSG00000255490ENST00000529914CIL_0007PY_0002ENSMUSG00000005973ENSMUST00000006128ENSMUST00000127019ENSMUSG00000027167ENSMUST00000028588ENSMUST00000122965ENSMUST00000148441ENSMUST00000152272ENSMUSG00000055312ENSMUST00000068813ENSMUST00000131060ENSMUSG00000080859ENSMUST00000119438ENSMUSG00000084870ENSMUST00000123441ENSMUSG00000086029ENSMUST00000126948ENSMUST00000149133ENSMUSG00000086764ENSMUST00000130677
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000049449 ENST00000054950 10.534±0.00 N/A 1.064±0.00 1.870±0.01 5.646±1.79 5.630±1.87 2.592±0.84 6.032±2.47 3.690±0.00 4.582±0.92 3.287±1.73 18.629±10.64 51.938±10.33 6.538±2.23
ENST00000506388 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527337 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528630 N/A 37.880±0.00 N/A N/A 18.043±0.00 N/A N/A 25.432±0.00 14.500±0.00 22.129±0.00 8.510±0.00 N/A N/A 32.778±0.00
ENST00000530146 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530348 N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.232±0.00 N/A N/A N/A N/A
ENST00000531345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532474 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532721 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.767±0.00 N/A N/A N/A
ENST00000532942 N/A N/A 3.095±0.00 4.676±1.20 9.619±0.00 2.961±0.00 0.881±0.00 10.277±0.00 N/A 5.476±0.00 N/A 13.675±0.00 29.458±0.00 6.531±0.00
ENST00000533898 N/A N/A 0.485±0.00 N/A N/A N/A 0.423±0.00 N/A N/A 1.794±0.00 N/A N/A N/A N/A
ENSG00000109911 ENST00000350638 1.339±0.00 0.516±0.00 N/A 3.159±1.19 1.039±0.00 2.000±0.00 1.575±0.59 1.326±0.97 1.174±0.31 0.942±0.47 1.046±0.30 2.254±0.97 2.798±0.49 2.174±0.39
ENST00000379163 N/A N/A 0.401±0.00 N/A N/A N/A 0.494±0.03 2.157±0.00 1.452±0.00 N/A N/A 1.109±0.00 N/A 0.417±0.00
ENST00000395934 0.649±0.00 1.882±0.00 N/A N/A 0.979±0.00 0.649±0.00 N/A 1.064±0.00 N/A 0.849±0.00 0.483±0.00 0.345±0.00 0.521±0.00 0.733±0.12
ENST00000474374 N/A N/A 1.172±0.00 2.757±0.00 2.490±0.00 2.159±1.31 N/A 1.633±0.00 2.497±0.00 2.921±0.00 0.365±0.00 1.935±0.00 1.500±0.07 N/A
ENSG00000227160 ENST00000419556 0.144±0.00 0.049±0.00 N/A 0.107±0.00 0.128±0.00 0.093±0.00 0.066±0.00 N/A N/A 0.065±0.00 N/A 0.104±0.00 N/A N/A
ENST00000525689 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.052±0.00 N/A 0.087±0.00 0.191±0.00 0.057±0.00
ENSG00000228061 ENST00000429821 N/A N/A N/A 0.238±0.05 3.039±0.00 0.492±0.00 0.141±0.00 N/A 0.594±0.00 0.225±0.00 N/A N/A N/A N/A
ENST00000434742 N/A N/A N/A 0.111±0.00 N/A N/A 0.121±0.00 N/A 0.087±0.00 N/A 1.358±0.00 N/A N/A 0.044±0.00
ENST00000454509 N/A 0.215±0.00 0.100±0.00 0.433±0.12 0.041±0.00 0.097±0.00 0.040±0.00 N/A 0.555±0.00 N/A N/A 0.345±0.00 0.111±0.00 0.081±0.02
ENSG00000254584 ENST00000531627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.015±2.10
ENST00000531962 0.475±0.00 0.329±0.00 N/A 0.159±0.00 0.361±0.00 0.733±0.00 0.348±0.00 1.087±0.00 0.355±0.00 0.611±0.00 0.577±0.00 0.056±0.00 N/A 1.757±1.28
ENSG00000254627 ENST00000533832 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.144±0.00 N/A 0.270±0.06
ENSG00000254836 ENST00000525382 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.235±0.11
ENSG00000255375 ENST00000525133 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.054±0.00 0.067±0.00 0.735±0.02
ENSG00000255490 ENST00000529914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.041±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005973 ENSMUST00000006128 17.098±10.71 46.564±34.31 35.480±6.74 13.545±2.63 12.994±9.29 3.566±2.90 3.988±0.40 2.944±0.77 4.563±3.58 21.950±5.98 1.881±0.22 28.701±25.78 14.691±8.21 2.125±0.79
ENSMUST00000127019 N/A N/A 5.441±0.00 3.900±0.00 1.505±0.00 N/A 1.626±0.44 0.839±0.07 1.475±0.37 N/A 0.604±0.22 23.035±6.51 8.949±1.61 N/A
ENSMUSG00000027167 ENSMUST00000028588 N/A N/A 1.877±0.00 N/A 1.985±0.00 N/A N/A N/A N/A N/A 1.053±0.25 2.863±0.13 1.926±0.82 N/A
ENSMUST00000122965 3.092±0.56 2.818±1.00 2.415±0.16 3.448±2.28 2.484±1.02 2.565±0.48 1.451±0.31 2.134±0.24 3.300±0.99 2.421±0.27 0.682±0.23 3.480±1.88 1.245±0.64 1.946±0.86
ENSMUST00000148441 N/A 9.826±0.00 N/A 13.705±0.00 4.418±1.50 3.004±0.36 N/A N/A 4.268±0.97 3.194±0.00 N/A 8.239±3.90 N/A 10.865±0.00
ENSMUST00000152272 N/A N/A 2.390±0.00 N/A N/A N/A 1.574±0.00 N/A 4.964±0.76 N/A N/A N/A N/A 1.441±0.84
ENSMUSG00000055312 ENSMUST00000068813 0.221±0.09 0.103±0.03 0.036±0.01 0.031±0.00 0.173±0.09 0.075±0.00 0.058±0.03 62.876±4.44 5.793±4.78 N/A N/A 0.310±0.19 0.868±0.79 0.222±0.13
ENSMUST00000131060 0.351±0.15 0.148±0.10 N/A 0.072±0.00 0.353±0.15 0.078±0.01 0.181±0.09 76.558±22.60 10.438±7.07 0.140±0.06 N/A 0.668±0.35 N/A 0.218±0.09
ENSMUSG00000080859 ENSMUST00000119438 N/A N/A N/A 21.190±0.00 N/A N/A N/A N/A 60.645±0.58 N/A N/A N/A N/A N/A
ENSMUSG00000084870 ENSMUST00000123441 N/A N/A 0.058±0.00 0.059±0.02 0.148±0.02 N/A N/A N/A 0.124±0.04 N/A 0.109±0.00 0.072±0.00 0.090±0.03 0.239±0.20
ENSMUSG00000086029 ENSMUST00000126948 N/A N/A 0.015±0.00 0.062±0.04 N/A N/A N/A N/A N/A N/A N/A N/A 0.010±0.00 0.090±0.00
ENSMUST00000149133 N/A N/A N/A 0.043±0.03 N/A 0.067±0.00 N/A N/A 0.010±0.00 N/A N/A N/A N/A 0.044±0.02
ENSMUSG00000086764 ENSMUST00000130677 N/A N/A N/A 0.086±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.989±0.76

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