C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027206 Cops2 10090 - 2:125830304-125859139 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028635 Cops2-002 125831602-125859139 protein_coding
  ENSMUST00000110462 Cops2-003 125831599-125859039 protein_coding
  ENSMUST00000110463 Cops2-001 125830304-125859139 protein_coding
  ENSMUST00000139343 Cops2-004 125842722-125858996 processed_transcript
  ENSMUST00000152683 Cops2-005 125849757-125859063 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028635ENSMUST00000110462ENSMUST00000110463ENSMUST00000139343
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028635 4.218±0.00 15.688±1.31 14.174±1.80 3.832±0.87 3.323±1.34 7.321±0.00 11.479±8.68 N/A 15.084±2.37 18.546±2.92 27.294±4.99 11.959±4.31
ENSMUST00000110462 8.371±1.78 N/A N/A 5.475±1.49 4.626±1.16 10.483±2.35 5.180±0.76 7.233±0.80 4.304±0.00 8.422±1.98 9.567±3.15 9.321±0.53
ENSMUST00000110463 3.968±1.01 10.073±0.90 10.603±0.79 2.330±0.12 1.863±0.16 4.135±0.00 10.854±6.13 3.155±0.25 5.517±1.62 9.991±4.02 11.618±2.92 2.396±0.00
ENSMUST00000139343 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 32.621±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002PL CIL_0002PL_0002 CGP 2:125736986-125859139
CIL_0004QE CIL_0004QE_0003 CGP 2:125830304-125984299

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 ISS cytoplasm
GO:0008180 ISS COP9 signalosome
GO:0008283 IMP cell proliferation
GO:0010388 IEA cullin deneddylation
GO:0030182 IEA neuron differentiation
GO:0035914 IMP skeletal muscle cell differentiation
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004785 cops2 COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis) protein_coding Danio_rerio
ENSG00000166200 COPS2 COP9 signalosome subunit 2 protein_coding Homo_sapiens

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