C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110462 Cops2-003 ENSMUSG00000027206 10090 - 2:125831599-125859039 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110462
Transcript ID Adipose Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110462 8.371±1.78 5.475±1.49 4.626±1.16 10.483±2.35 5.180±0.76 7.233±0.80 4.304±0.00 8.422±1.98 9.567±3.15 9.321±0.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002PL CIL_0002PL_0002 CGP 2:125736986-125859139
CIL_0004QE CIL_0004QE_0003 CGP 2:125830304-125984299

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0008180 IDA COP9 signalosome
GO:0008283 IMP cell proliferation
GO:0035914 IMP skeletal muscle cell differentiation
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000133872 cops2-002 protein_coding Danio_rerio 0 459
ENSDART00000006124 cops2-001 protein_coding Danio_rerio 0 431
ENST00000299259 COPS2-003 protein_coding Homo_sapiens 0 1748
ENST00000388901 COPS2-001 protein_coding Homo_sapiens 0 1751
ENST00000542928 COPS2-002 protein_coding Homo_sapiens 0 1526
ENST00000558545 COPS2-004 retained_intron Homo_sapiens 0 579
ENST00000558843 COPS2-006 protein_coding Homo_sapiens 0 808
ENST00000559016 COPS2-007 retained_intron Homo_sapiens 0 375
ENST00000560240 COPS2-008 nonsense_mediated_decay Homo_sapiens 0 222
ENST00000561248 COPS2-005 protein_coding Homo_sapiens 0 429

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