C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110463 Cops2-001 ENSMUSG00000027206 10090 - 2:125830304-125859139 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110463
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110463 3.968±1.01 10.073±0.90 10.603±0.79 2.330±0.12 1.863±0.16 4.135±0.00 10.854±6.13 3.155±0.25 5.517±1.62 9.991±4.02 11.618±2.92 2.396±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002PL CIL_0002PL_0002 CGP 2:125736986-125859139
CIL_0004QE CIL_0004QE_0003 CGP 2:125830304-125984299

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 ISS cytoplasm
GO:0008180 ISS COP9 signalosome
GO:0008283 IMP cell proliferation
GO:0010388 IEA cullin deneddylation
GO:0030182 IEA neuron differentiation
GO:0035914 IMP skeletal muscle cell differentiation
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000006124 cops2-001 protein_coding Danio_rerio 0 1016
ENSDART00000133872 cops2-002 protein_coding Danio_rerio 0 688
ENST00000275072 PM20D2-001 protein_coding Homo_sapiens 0 612
ENST00000299259 COPS2-003 protein_coding Homo_sapiens 0 2929
ENST00000388901 COPS2-001 protein_coding Homo_sapiens 0 3965
ENST00000542928 COPS2-002 protein_coding Homo_sapiens 0 2145
ENST00000558545 COPS2-004 retained_intron Homo_sapiens 0 579
ENST00000558843 COPS2-006 protein_coding Homo_sapiens 0 1125
ENST00000559016 COPS2-007 retained_intron Homo_sapiens 0 569
ENST00000560240 COPS2-008 nonsense_mediated_decay Homo_sapiens 0 222
ENST00000561248 COPS2-005 protein_coding Homo_sapiens 0 658

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