C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000060955 Gpcpd1-001 ENSMUSG00000027346 10090 - 2:132529082-132578233 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000060955
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000060955 6.393±1.03 1.681±0.00 7.181±0.46 7.430±0.86 6.378±3.02 3.037±1.50 16.729±6.33 1.847±0.80 8.210±4.44 4.470±2.49 33.053±10.11 3.328±1.34 6.280±1.79 3.456±1.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00041F CIL_00041F_0002 CGP 2:132337733-132587729
CIL_00057F CIL_00057F_0002 CGP 2:132529082-132751055

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006629 IEA lipid metabolic process
GO:0007519 IMP skeletal muscle tissue development
GO:0008152 IDA metabolic process
GO:0047389 IDA glycerophosphocholine phosphodiesterase activity
GO:2001070 IEA starch binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000379019 GPCPD1-001 protein_coding Homo_sapiens 0 3157
ENST00000418646 GPCPD1-004 protein_coding Homo_sapiens 0 1286
ENST00000433031 RP11-1217F2.1-001 unprocessed_pseudogene Homo_sapiens 0 2124
ENST00000473797 GPCPD1-005 processed_transcript Homo_sapiens 0 231
ENST00000481038 GPCPD1-002 processed_transcript Homo_sapiens 0 2769
ENST00000481690 GPCPD1-003 processed_transcript Homo_sapiens 0 555

Loading