C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028822 Gpcpd1-006 ENSMUSG00000027346 10090 - 2:132532726-132578133 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000028822
Transcript ID Adipose Adrenal Brain Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000028822 1.981±0.43 0.897±0.70 3.699±0.00 0.836±0.13 0.686±0.06 5.249±2.01 2.323±0.27 2.772±1.32 5.371±2.25 2.655±1.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00041F CIL_00041F_0002 CGP 2:132337733-132587729
CIL_00057F CIL_00057F_0002 CGP 2:132529082-132751055

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0006629 IEA lipid metabolic process
GO:0007519 IMP skeletal muscle tissue development
GO:0047389 IDA glycerophosphocholine phosphodiesterase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000379019 GPCPD1-001 protein_coding Homo_sapiens 0 2082
ENST00000418646 GPCPD1-004 protein_coding Homo_sapiens 0 396
ENST00000433031 RP11-1217F2.1-001 unprocessed_pseudogene Homo_sapiens 0 1801
ENST00000473797 GPCPD1-005 processed_transcript Homo_sapiens 0 231
ENST00000481038 GPCPD1-002 processed_transcript Homo_sapiens 0 1881
ENST00000481690 GPCPD1-003 processed_transcript Homo_sapiens 0 555

Loading