C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosome binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000154649 Rrbp1-003 ENSMUSG00000027422 10090 - 2:143947395-143952281 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000154649
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000154649 22.370±4.88 20.043±0.00 26.260±1.82 7.360±0.00 19.111±4.37 52.674±9.39 9.718±2.43 18.639±2.65 29.099±4.96 16.142±0.00 5.453±1.32 36.358±20.75 93.876±48.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YD CIL_0008YD_0002 VISTA 2:143876906-144478692
CIL_0002D9 CIL_0002D9_0002 CGP 2:143915320-144011263
CIL_0002DA CIL_0002DA_0002 CGP 2:143947395-144073979

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000246043 RRBP1-201 protein_coding Homo_sapiens 0 719
ENST00000360807 RRBP1-001 protein_coding Homo_sapiens 0 719
ENST00000377807 RRBP1-202 protein_coding Homo_sapiens 0 719
ENST00000377813 RRBP1-002 protein_coding Homo_sapiens 0 719
ENST00000418013 RP11-598O8.1-001 processed_pseudogene Homo_sapiens 0 322
ENST00000455029 RRBP1-007 protein_coding Homo_sapiens 0 538
ENST00000468428 RRBP1-004 retained_intron Homo_sapiens 0 721
ENST00000470422 RRBP1-005 protein_coding Homo_sapiens 0 710
ENST00000610403 RRBP1-203 protein_coding Homo_sapiens 0 719

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