Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Accession	Transcript Name	Contained in Gene	Tax ID	Strand	Position	Biotype
Transcript Info
Description:	ribosome binding protein 1
ENSMUST00000016072	Rrbp1-002	ENSMUSG00000027422	10090	-	2:143947395-144011263	protein_coding

Expression Patterns

Transcript ID	Adipose	Adrenal	Bladder	Brain	Breast	Colon	Heart	Kidney	Liver	Lung	Muscle	Ovary	Placenta	Testis
ENSMUST00000016072	17.169±6.66	6.171±2.44	16.021±4.01	8.629±4.42	11.679±4.44	43.684±4.75	7.333±1.33	12.773±0.53	27.984±7.95	24.202±2.84	3.521±1.31	28.670±11.80	72.650±25.06	15.308±6.33

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_0008YD	CIL_0008YD_0002	VISTA	2:143876906-144478692
CIL_0002D9	CIL_0002D9_0002	CGP	2:143915320-144011263
CIL_0002DA	CIL_0002DA_0002	CGP	2:143947395-144073979

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0001649	IEA	osteoblast differentiation
GO:0005515	IPI	protein binding
GO:0005783	IEA	endoplasmic reticulum
GO:0015031	IEA	protein transport
GO:0016020	IEA	membrane
GO:0030176	IEA	integral component of endoplasmic reticulum membrane
GO:0044822	IEA	poly(A) RNA binding

Homologs
ENSEMBL Accession	Gene Name	Biotype	Species	E-Value	Bit Score
ENST00000246043	RRBP1-201	protein_coding	Homo_sapiens	0	3158
ENST00000360807	RRBP1-001	protein_coding	Homo_sapiens	0	2536
ENST00000377807	RRBP1-202	protein_coding	Homo_sapiens	0	2536
ENST00000377813	RRBP1-002	protein_coding	Homo_sapiens	0	3158
ENST00000398782	RRBP1-003	protein_coding	Homo_sapiens	0	1048
ENST00000418013	RP11-598O8.1-001	processed_pseudogene	Homo_sapiens	0	573
ENST00000455029	RRBP1-007	protein_coding	Homo_sapiens	0	2316
ENST00000468428	RRBP1-004	retained_intron	Homo_sapiens	0	719
ENST00000470422	RRBP1-005	protein_coding	Homo_sapiens	0	1155
ENST00000610403	RRBP1-203	protein_coding	Homo_sapiens	0	2669

Loading