C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine rich repeat and coiled-coil domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027550 Lrrcc1 10090 + 3:14533788-14572658 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000091325 Lrrcc1-002 14533824-14566103 protein_coding
  ENSMUST00000108370 Lrrcc1-004 14533788-14572658 protein_coding
  ENSMUST00000163660 Lrrcc1-006 14533879-14562163 protein_coding
  ENSMUST00000165436 Lrrcc1-005 14533934-14551473 nonsense_mediated_decay
  ENSMUST00000167858 Lrrcc1-003 14548117-14566406 protein_coding
  ENSMUST00000169079 Lrrcc1-001 14533823-14568301 protein_coding
  ENSMUST00000169799 Lrrcc1-007 14550380-14559325 protein_coding
  ENSMUST00000171620 Lrrcc1-008 14548193-14554472 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000091325ENSMUST00000108370ENSMUST00000165436ENSMUST00000167858ENSMUST00000169079
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000091325 0.477±0.00 N/A N/A 2.719±0.00 N/A 0.500±0.02 N/A 0.235±0.00 0.568±0.38 0.559±0.00 N/A 1.088±0.80 2.066±0.95 26.455±0.00
ENSMUST00000108370 0.252±0.00 0.289±0.09 0.682±0.00 N/A N/A N/A N/A 0.265±0.00 0.469±0.00 0.827±0.00 0.332±0.09 0.935±0.71 1.050±0.27 26.576±2.38
ENSMUST00000165436 N/A N/A N/A N/A N/A 0.691±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167858 N/A 0.225±0.06 N/A 4.267±0.00 N/A 0.215±0.00 N/A N/A 0.069±0.00 N/A N/A 2.345±0.37 1.771±0.32 N/A
ENSMUST00000169079 0.427±0.05 0.259±0.11 1.037±0.06 2.272±0.29 0.656±0.21 0.513±0.14 0.384±0.15 0.720±0.16 0.381±0.24 0.959±0.51 0.268±0.09 1.189±0.69 0.651±0.28 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00071V CIL_00071V_0002 CGP 3:14533788-14606308

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005813 IEA centrosome
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078535 lrrcc1 leucine rich repeat and coiled-coil domain containing 1 protein_coding Danio_rerio
ENSG00000133739 LRRCC1 leucine rich repeat and coiled-coil centrosomal protein 1 protein_coding Homo_sapiens

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