C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ADP-ribosylation factor GTPase activating protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108861 Arfgap1-006 ENSMUSG00000027575 10090 + 2:180967245-180981700 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLiverLungOvaryTestisENSMUST00000108861
Transcript ID Adrenal Breast Colon Liver Lung Ovary Testis
ENSMUST00000108861 8.337±1.16 5.002±0.00 6.783±0.72 2.493±0.09 3.935±0.00 10.774±1.69 3.294±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00045A CIL_00045A_0002 CGP 2:180934772-180982526
CIL_00045B CIL_00045B_0002 CGP 2:180967225-181017540

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005096 ISO GTPase activator activity
GO:0005515 IPI protein binding
GO:0008060 IEA ARF GTPase activator activity
GO:0008270 IEA zinc ion binding
GO:0032312 IEA regulation of ARF GTPase activity
GO:0043547 IEA positive regulation of GTPase activity
GO:0045202 IDA synapse

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000353546 ARFGAP1-003 protein_coding Homo_sapiens 0 830
ENST00000370275 ARFGAP1-004 protein_coding Homo_sapiens 0 900
ENST00000370283 ARFGAP1-001 protein_coding Homo_sapiens 0 900
ENST00000395285 ARFGAP1-005 retained_intron Homo_sapiens 0 259
ENST00000468975 ARFGAP1-009 processed_transcript Homo_sapiens 0 261
ENST00000518601 ARFGAP1-016 protein_coding Homo_sapiens 0 507
ENST00000518618 ARFGAP1-019 processed_transcript Homo_sapiens 0 257
ENST00000518794 ARFGAP1-002 processed_transcript Homo_sapiens 0 261
ENST00000519273 ARFGAP1-201 protein_coding Homo_sapiens 0 453
ENST00000519531 ARFGAP1-014 retained_intron Homo_sapiens 0 832
ENST00000519604 ARFGAP1-202 protein_coding Homo_sapiens 0 601
ENST00000520485 ARFGAP1-008 nonsense_mediated_decay Homo_sapiens 0 453
ENST00000522403 ARFGAP1-015 protein_coding Homo_sapiens 0 898
ENST00000522959 ARFGAP1-011 retained_intron Homo_sapiens 0 457
ENST00000523460 ARFGAP1-012 protein_coding Homo_sapiens 0 261
ENST00000524192 ARFGAP1-013 retained_intron Homo_sapiens 0 636
ENST00000547204 ARFGAP1-007 protein_coding Homo_sapiens 0 601
ENST00000549047 ARFGAP1-021 protein_coding Homo_sapiens 0 671
ENST00000550188 ARFGAP1-006 protein_coding Homo_sapiens 0 462

Loading