C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ADP-ribosylation factor GTPase activating protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029092 Arfgap1-001 ENSMUSG00000027575 10090 + 2:180967234-180982526 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029092
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029092 10.395±3.31 10.104±3.29 16.195±3.60 13.557±0.00 9.927±1.35 14.496±2.04 4.482±0.65 7.101±0.76 8.863±2.31 8.121±1.84 5.460±1.11 14.669±4.34 20.460±4.42 7.912±3.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00045A CIL_00045A_0002 CGP 2:180934772-180982526
CIL_00045B CIL_00045B_0002 CGP 2:180967225-181017540

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0005096 ISO GTPase activator activity
GO:0005515 IPI protein binding
GO:0008060 IEA ARF GTPase activator activity
GO:0008270 IEA zinc ion binding
GO:0015031 IEA protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0032312 IEA regulation of ARF GTPase activity
GO:0043547 IEA positive regulation of GTPase activity
GO:0045202 IDA synapse

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000353546 ARFGAP1-003 protein_coding Homo_sapiens 0 1057
ENST00000370275 ARFGAP1-004 protein_coding Homo_sapiens 0 990
ENST00000370283 ARFGAP1-001 protein_coding Homo_sapiens 0 1245
ENST00000395285 ARFGAP1-005 retained_intron Homo_sapiens 0 261
ENST00000468975 ARFGAP1-009 processed_transcript Homo_sapiens 0 420
ENST00000518601 ARFGAP1-016 protein_coding Homo_sapiens 0 507
ENST00000518618 ARFGAP1-019 processed_transcript Homo_sapiens 0 257
ENST00000518794 ARFGAP1-002 processed_transcript Homo_sapiens 0 420
ENST00000519273 ARFGAP1-201 protein_coding Homo_sapiens 0 702
ENST00000519531 ARFGAP1-014 retained_intron Homo_sapiens 0 832
ENST00000519604 ARFGAP1-202 protein_coding Homo_sapiens 0 828
ENST00000520485 ARFGAP1-008 nonsense_mediated_decay Homo_sapiens 0 702
ENST00000522403 ARFGAP1-015 protein_coding Homo_sapiens 0 913
ENST00000522959 ARFGAP1-011 retained_intron Homo_sapiens 0 457
ENST00000523460 ARFGAP1-012 protein_coding Homo_sapiens 0 351
ENST00000524192 ARFGAP1-013 retained_intron Homo_sapiens 0 636
ENST00000547204 ARFGAP1-007 protein_coding Homo_sapiens 0 828
ENST00000549047 ARFGAP1-021 protein_coding Homo_sapiens 0 931
ENST00000550188 ARFGAP1-006 protein_coding Homo_sapiens 0 462

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