C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: microtubule-associated protein 1 light chain 3 alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029128 Map1lc3a-001 ENSMUSG00000027602 10090 + 2:155276297-155278073 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029128
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029128 99.695±23.05 756.340±110.21 42.595±0.81 49.796±28.43 111.793±56.51 114.721±12.82 211.717±74.69 88.400±9.06 21.858±15.21 116.957±32.88 29.855±7.27 148.859±52.52 12.206±6.61 350.583±8.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098F CIL_00098F_0002 VISTA 2:154750090-155352094
CIL_0006S0 CIL_0006S0_0003 CGP 2:155236533-155278073
CIL_0005BD CIL_0005BD_0002 CGP 2:155276297-155357430

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000045 ISS autophagic vacuole assembly
GO:0000421 IDA autophagic vacuole membrane
GO:0000422 IEA mitochondrion degradation
GO:0005515 IPI protein binding
GO:0005543 IEA phospholipid binding
GO:0005737 ISS cytoplasm
GO:0005770 IEA late endosome
GO:0005776 ISS autophagic vacuole
GO:0005829 IEA cytosol
GO:0005874 IEA microtubule
GO:0006914 IEA autophagy
GO:0008429 IEA phosphatidylethanolamine binding
GO:0031090 ISS organelle membrane
GO:0031410 IEA cytoplasmic vesicle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000360668 MAP1LC3A-002 protein_coding Homo_sapiens 0 942
ENST00000374837 MAP1LC3A-001 protein_coding Homo_sapiens 0 582
ENST00000397709 MAP1LC3A-003 protein_coding Homo_sapiens 0 693
ENST00000476428 MAP1LC3A-004 processed_transcript Homo_sapiens 0 497

Loading