C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribophorin II
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000116380 Rpn2-001 ENSMUSG00000027642 10090 + 2:157279059-157326319 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000116380
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000116380 29.730±8.43 64.956±16.97 18.752±2.97 28.372±2.00 42.615±8.33 60.850±12.91 26.628±11.55 34.542±10.97 39.647±9.31 54.448±18.21 56.541±18.26 40.820±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004XV CIL_0004XV_0002 CGP 2:157145893-157279549
CIL_00020D CIL_00020D_0002 CGP 2:157208550-157326319
CIL_0004Y1 CIL_0004Y1_0002 CGP 2:157279017-157347506

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000421 IEA autophagic vacuole membrane
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005791 IEA rough endoplasmic reticulum
GO:0006487 IMP protein N-linked glycosylation
GO:0007568 IEA aging
GO:0008250 IEA oligosaccharyltransferase complex
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016757 IEA transferase activity, transferring glycosyl groups
GO:0042493 IEA response to drug
GO:0043022 IEA ribosome binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000237530 RPN2-001 protein_coding Homo_sapiens 0 2414
ENST00000343811 MROH8-003 protein_coding Homo_sapiens 2e-30 139
ENST00000373622 RPN2-003 protein_coding Homo_sapiens 0 1908
ENST00000373632 RPN2-002 protein_coding Homo_sapiens 0 577
ENST00000400440 MROH8-007 protein_coding Homo_sapiens 1e-30 139
ENST00000400441 MROH8-201 protein_coding Homo_sapiens 2e-30 139
ENST00000421643 MROH8-001 protein_coding Homo_sapiens 1e-30 139
ENST00000437329 RPN2-006 protein_coding Homo_sapiens 0 327
ENST00000456102 RPN2-004 protein_coding Homo_sapiens 0 532
ENST00000456400 RPN2-007 protein_coding Homo_sapiens 0 442
ENST00000462163 RPN2-005 nonsense_mediated_decay Homo_sapiens 0 462
ENST00000470352 RPN2-008 processed_transcript Homo_sapiens 0 327

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