C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: NMD3 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027787 Nmd3 10090 + 3:69721985-69749042 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029358 Nmd3-001 69721985-69749042 protein_coding
  ENSMUST00000127211 Nmd3-002 69722090-69731976 retained_intron
  ENSMUST00000135266 Nmd3-005 69722083-69730533 processed_transcript
  ENSMUST00000143041 Nmd3-003 69722032-69735089 nonsense_mediated_decay
  ENSMUST00000143249 Nmd3-006 69722255-69726409 protein_coding
  ENSMUST00000149680 Nmd3-004 69721985-69724461 retained_intron
  ENSMUST00000150210 Nmd3-007 69746432-69749042 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029358ENSMUST00000143249ENSMUST00000149680ENSMUST00000150210
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029358 4.666±1.46 4.663±1.84 6.623±0.07 5.863±1.71 2.563±0.63 1.986±0.67 2.748±0.23 4.067±0.80 7.431±3.86 3.162±0.51 6.961±0.48 6.290±4.71 23.121±14.74 6.681±3.04
ENSMUST00000143249 N/A 14.792±2.07 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.434±0.73
ENSMUST00000149680 7.806±2.76 33.642±10.52 N/A N/A 10.300±2.00 13.560±1.35 4.320±0.44 6.867±1.67 18.779±5.03 9.940±1.80 N/A 21.614±4.89 N/A 9.795±1.25
ENSMUST00000150210 N/A N/A N/A 16.213±0.00 N/A N/A N/A N/A N/A N/A N/A 35.077±0.00 67.797±29.88 15.065±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001Z9 CIL_0001Z9_0002 CGP 3:69574186-69749042
CIL_0004K1 CIL_0004K1_0003 CGP 3:69721985-69859896

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000055 IEA ribosomal large subunit export from nucleus
GO:0005654 IEA nucleoplasm
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0030674 IEA protein binding, bridging
GO:0043023 IEA ribosomal large subunit binding
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015676 nmd3 NMD3 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000169251 NMD3 NMD3 ribosome export adaptor protein_coding Homo_sapiens

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