C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NMD3 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029358 Nmd3-001 ENSMUSG00000027787 10090 + 3:69721985-69749042 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029358
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029358 4.666±1.46 4.663±1.84 6.623±0.07 5.863±1.71 2.563±0.63 1.986±0.67 2.748±0.23 4.067±0.80 7.431±3.86 3.162±0.51 6.961±0.48 6.290±4.71 23.121±14.74 6.681±3.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001Z9 CIL_0001Z9_0002 CGP 3:69574186-69749042
CIL_0004K1 CIL_0004K1_0003 CGP 3:69721985-69859896

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000055 IEA ribosomal large subunit export from nucleus
GO:0005654 IEA nucleoplasm
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0030674 IEA protein binding, bridging
GO:0043023 IEA ribosomal large subunit binding
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000351193 NMD3-001 protein_coding Homo_sapiens 0 2078
ENST00000421815 NMD3P2-001 processed_pseudogene Homo_sapiens 0 850
ENST00000439704 NMD3P1-001 processed_pseudogene Homo_sapiens 0 1688
ENST00000460469 NMD3-005 protein_coding Homo_sapiens 0 2078
ENST00000460503 NMD3-011 protein_coding Homo_sapiens 0 640
ENST00000463518 NMD3-009 protein_coding Homo_sapiens 0 889
ENST00000468606 NMD3-012 protein_coding Homo_sapiens 0 364
ENST00000472947 NMD3-002 protein_coding Homo_sapiens 0 2050
ENST00000473909 NMD3-008 retained_intron Homo_sapiens 0 664
ENST00000476237 NMD3-010 protein_coding Homo_sapiens 0 664
ENST00000478160 NMD3-013 processed_transcript Homo_sapiens 0 562
ENST00000493066 NMD3-007 protein_coding Homo_sapiens 0 889

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