C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NMD3 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000149680 Nmd3-004 ENSMUSG00000027787 10090 + 3:69721985-69724461 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000149680
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000149680 7.806±2.76 33.642±10.52 10.300±2.00 13.560±1.35 4.320±0.44 6.867±1.67 18.779±5.03 9.940±1.80 21.614±4.89 9.795±1.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001Z9 CIL_0001Z9_0002 CGP 3:69574186-69749042
CIL_0004K1 CIL_0004K1_0003 CGP 3:69721985-69859896

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000351193 NMD3-001 protein_coding Homo_sapiens 0 224
ENST00000439704 NMD3P1-001 processed_pseudogene Homo_sapiens 1e-38 165
ENST00000460469 NMD3-005 protein_coding Homo_sapiens 0 224
ENST00000460503 NMD3-011 protein_coding Homo_sapiens 0 224
ENST00000463518 NMD3-009 protein_coding Homo_sapiens 0 224
ENST00000468606 NMD3-012 protein_coding Homo_sapiens 0 224
ENST00000472947 NMD3-002 protein_coding Homo_sapiens 0 224
ENST00000473909 NMD3-008 retained_intron Homo_sapiens 0 224
ENST00000476237 NMD3-010 protein_coding Homo_sapiens 0 224
ENST00000478160 NMD3-013 processed_transcript Homo_sapiens 4e-30 135
ENST00000493066 NMD3-007 protein_coding Homo_sapiens 0 224

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