C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Ras-like without CAAX 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028057 Rit1 10090 + 3:88716838-88731049 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029692 Rit1-001 88716838-88729727 protein_coding
  ENSMUST00000165846 Rit1-005 88716881-88718007 retained_intron
  ENSMUST00000166234 Rit1-003 88716898-88731049 retained_intron
  ENSMUST00000170377 Rit1-002 88716894-88731041 nonsense_mediated_decay
  ENSMUST00000171645 Rit1-004 88716876-88726369 protein_coding
  ENSMUST00000172187 Rit1-008 88716911-88726319 retained_intron
  ENSMUST00000172252 Rit1-007 88716906-88729556 protein_coding
  ENSMUST00000172333 Rit1-006 88716899-88729548 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029692ENSMUST00000165846ENSMUST00000166234ENSMUST00000170377ENSMUST00000171645ENSMUST00000172252ENSMUST00000172333
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029692 20.418±0.17 21.038±3.48 24.141±3.72 10.027±1.80 18.650±2.35 17.970±1.61 24.239±2.25 13.297±1.28 9.468±4.55 18.868±1.54 5.236±1.01 15.885±3.90 13.706±5.40 11.079±0.47
ENSMUST00000165846 N/A 11.872±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166234 N/A 1.882±0.00 2.655±0.19 2.618±0.30 2.838±0.19 3.362±0.00 N/A N/A 1.703±0.49 3.412±0.00 N/A 3.723±1.32 1.697±0.00 0.970±0.00
ENSMUST00000170377 N/A N/A 5.224±0.12 2.143±0.13 N/A 4.509±0.00 N/A N/A 1.903±0.58 3.732±0.00 1.291±0.43 4.340±1.24 3.026±0.81 0.400±0.00
ENSMUST00000171645 N/A 11.023±1.97 N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.393±0.63 38.551±0.00 N/A
ENSMUST00000172252 N/A N/A N/A 10.345±0.00 11.757±0.00 N/A N/A N/A N/A N/A N/A 18.332±1.25 13.967±2.67 9.529±0.00
ENSMUST00000172333 N/A N/A N/A N/A N/A N/A N/A N/A 2.857±1.27 N/A 2.338±0.26 6.858±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008P5 CIL_0008P5_0002 VISTA 3:88218217-88823366
CIL_000898 CIL_000898_0002 VISTA 3:88224783-88827970

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005525 IDA GTP binding
GO:0005886 IDA plasma membrane
GO:0006184 IEA GTP catabolic process
GO:0007264 IEA small GTPase mediated signal transduction
GO:0007265 IEA Ras protein signal transduction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069150 rit1 Ras-like without CAAX 1 protein_coding Danio_rerio
ENSG00000143622 RIT1 Ras-like without CAAX 1 protein_coding Homo_sapiens

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