C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ras-like without CAAX 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029692 Rit1-001 ENSMUSG00000028057 10090 + 3:88716838-88729727 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029692
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029692 20.418±0.17 21.038±3.48 24.141±3.72 10.027±1.80 18.650±2.35 17.970±1.61 24.239±2.25 13.297±1.28 9.468±4.55 18.868±1.54 5.236±1.01 15.885±3.90 13.706±5.40 11.079±0.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008P5 CIL_0008P5_0002 VISTA 3:88218217-88823366
CIL_000898 CIL_000898_0002 VISTA 3:88224783-88827970

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005525 IDA GTP binding
GO:0005886 IDA plasma membrane
GO:0006184 IEA GTP catabolic process
GO:0007265 IEA Ras protein signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000368322 RIT1-002 protein_coding Homo_sapiens 0 785
ENST00000368323 RIT1-001 protein_coding Homo_sapiens 0 787
ENST00000461050 RIT1-003 nonsense_mediated_decay Homo_sapiens 0 741
ENST00000462687 RIT1-004 retained_intron Homo_sapiens 0 215
ENST00000539040 RIT1-005 protein_coding Homo_sapiens 0 656
ENST00000609492 RIT1-006 protein_coding Homo_sapiens 0 590

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