C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ras-like without CAAX 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170377 Rit1-002 ENSMUSG00000028057 10090 + 3:88716894-88731041 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonLiverLungMuscleOvaryPlacentaTestisENSMUST00000170377
Transcript ID Bladder Brain Colon Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000170377 5.224±0.12 2.143±0.13 4.509±0.00 1.903±0.58 3.732±0.00 1.291±0.43 4.340±1.24 3.026±0.81 0.400±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008P5 CIL_0008P5_0002 VISTA 3:88218217-88823366
CIL_000898 CIL_000898_0002 VISTA 3:88224783-88827970

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005525 IDA GTP binding
GO:0005886 IDA plasma membrane
GO:0006184 IEA GTP catabolic process
GO:0007264 IEA small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000368322 RIT1-002 protein_coding Homo_sapiens 0 320
ENST00000368323 RIT1-001 protein_coding Homo_sapiens 0 322
ENST00000461050 RIT1-003 nonsense_mediated_decay Homo_sapiens 0 468
ENST00000462687 RIT1-004 retained_intron Homo_sapiens 0 215
ENST00000539040 RIT1-005 protein_coding Homo_sapiens 0 191
ENST00000609492 RIT1-006 protein_coding Homo_sapiens 0 320

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