C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000156314 Rnf20-002 ENSMUSG00000028309 10090 + 4:49632060-49650251 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENSMUST00000156314
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENSMUST00000156314 4.223±1.15 3.305±1.08 15.594±0.00 5.413±2.53 4.884±1.58 2.175±0.49 1.951±0.34 4.975±1.40 7.656±6.43 12.247±3.81 1.627±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00034W CIL_00034W_0002 CGP 4:49584506-49656887
CIL_00034Z CIL_00034Z_0002 CGP 4:49632006-49845744

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0016574 IMP histone ubiquitination
GO:0031062 IMP positive regulation of histone methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000374819 RNF20-007 protein_coding Homo_sapiens 0 761
ENST00000389120 RNF20-001 protein_coding Homo_sapiens 0 2326
ENST00000466817 RNF20-006 protein_coding Homo_sapiens 0 608
ENST00000479306 RNF20-004 protein_coding Homo_sapiens 0 418
ENST00000481046 RNF20-005 processed_transcript Homo_sapiens 0 207

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