C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029989 Rnf20-001 ENSMUSG00000028309 10090 + 4:49632066-49656887 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029989
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029989 4.950±0.45 2.442±0.67 8.396±0.79 11.474±1.38 4.895±1.74 2.283±0.40 3.847±0.68 3.719±0.62 3.907±1.75 7.629±2.56 3.801±0.72 7.792±3.85 9.809±3.18 4.776±1.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00034W CIL_00034W_0002 CGP 4:49584506-49656887
CIL_00034Z CIL_00034Z_0002 CGP 4:49632006-49845744

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0008270 IEA zinc ion binding
GO:0016574 IMP histone ubiquitination
GO:0016874 IEA ligase activity
GO:0031062 IMP positive regulation of histone methylation
GO:0033503 ISS HULC complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000125309 rnf20-202 protein_coding Danio_rerio 0 407
ENST00000374819 RNF20-007 protein_coding Homo_sapiens 0 761
ENST00000389120 RNF20-001 protein_coding Homo_sapiens 0 3930
ENST00000466817 RNF20-006 protein_coding Homo_sapiens 0 608
ENST00000478072 RNF20-008 retained_intron Homo_sapiens 0 377
ENST00000479306 RNF20-004 protein_coding Homo_sapiens 0 418
ENST00000481046 RNF20-005 processed_transcript Homo_sapiens 0 207

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