C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167496 Rnf20-201 ENSMUSG00000028309 10090 + 4:49632060-49656886 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000167496
Transcript ID Adipose Adrenal Bladder Brain Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000167496 2.948±1.41 3.711±1.72 3.678±1.46 8.522±1.62 2.470±0.00 2.257±0.32 3.716±2.37 2.033±0.00 1.205±0.45 3.384±0.00 3.538±0.51 1.108±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00034W CIL_00034W_0002 CGP 4:49584506-49656887
CIL_00034Z CIL_00034Z_0002 CGP 4:49632006-49845744

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000151 IEA ubiquitin ligase complex
GO:0000209 IEA protein polyubiquitination
GO:0002039 IEA p53 binding
GO:0003682 IDA chromatin binding
GO:0003713 IEA transcription coactivator activity
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008270 IEA zinc ion binding
GO:0010390 IEA histone monoubiquitination
GO:0016574 IMP histone ubiquitination
GO:0016874 IEA ligase activity
GO:0030336 IEA negative regulation of cell migration
GO:0031062 IMP positive regulation of histone methylation
GO:0031625 IEA ubiquitin protein ligase binding
GO:0033503 ISS HULC complex
GO:0033523 IEA histone H2B ubiquitination
GO:0042393 IEA histone binding
GO:0045893 IEA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000125309 rnf20-202 protein_coding Danio_rerio 0 407
ENST00000374819 RNF20-007 protein_coding Homo_sapiens 0 761
ENST00000389120 RNF20-001 protein_coding Homo_sapiens 0 3930
ENST00000466817 RNF20-006 protein_coding Homo_sapiens 0 608
ENST00000478072 RNF20-008 retained_intron Homo_sapiens 0 377
ENST00000479306 RNF20-004 protein_coding Homo_sapiens 0 418
ENST00000481046 RNF20-005 processed_transcript Homo_sapiens 0 207

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