C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polypyrimidine tract binding protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000174586 Ptbp3-009 ENSMUSG00000028382 10090 - 4:59472048-59549295 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000174586
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000174586 6.733±1.80 6.483±1.65 4.119±0.04 1.690±0.09 6.038±1.92 9.609±1.75 1.651±0.44 3.888±2.25 7.400±4.61 8.924±2.63 0.521±0.15 12.913±4.36 19.660±2.46 1.038±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005X7 CIL_0005X7_0002 CGP 4:59314683-59549364
CIL_000228 CIL_000228_0003 CGP 4:59471868-59618689

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0043249 IEA erythrocyte maturation
GO:0048025 IMP negative regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000040308 ptbp3-201 protein_coding Danio_rerio 0.000000000000003 90
ENST00000210227 PTBP3-001 protein_coding Homo_sapiens 0 652
ENST00000334318 PTBP3-201 protein_coding Homo_sapiens 0 3193
ENST00000343327 PTBP3-005 protein_coding Homo_sapiens 0 2663
ENST00000374255 PTBP3-006 protein_coding Homo_sapiens 0 3151
ENST00000374257 PTBP3-004 protein_coding Homo_sapiens 0 3053
ENST00000450374 PTBP3-003 protein_coding Homo_sapiens 0 409
ENST00000458258 PTBP3-202 protein_coding Homo_sapiens 0 3011
ENST00000487997 PTBP3-002 processed_transcript Homo_sapiens 0 401

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