C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polypyrimidine tract binding protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030076 Ptbp3-001 ENSMUSG00000028382 10090 - 4:59471868-59549364 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030076
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030076 7.918±1.98 3.353±0.00 6.923±1.26 3.037±1.74 7.960±2.22 6.196±2.50 2.362±0.46 7.365±2.68 8.309±4.15 9.730±2.35 0.535±0.25 5.604±2.40 25.123±9.26 1.173±0.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005X7 CIL_0005X7_0002 CGP 4:59314683-59549364
CIL_000228 CIL_000228_0003 CGP 4:59471868-59618689

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0043249 IEA erythrocyte maturation
GO:0048025 IMP negative regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000040308 ptbp3-201 protein_coding Danio_rerio 0.000000000000003 90
ENST00000210227 PTBP3-001 protein_coding Homo_sapiens 0 652
ENST00000334318 PTBP3-201 protein_coding Homo_sapiens 0 3053
ENST00000343327 PTBP3-005 protein_coding Homo_sapiens 0 2663
ENST00000374255 PTBP3-006 protein_coding Homo_sapiens 0 3013
ENST00000374257 PTBP3-004 protein_coding Homo_sapiens 0 3199
ENST00000450374 PTBP3-003 protein_coding Homo_sapiens 0 276
ENST00000458258 PTBP3-202 protein_coding Homo_sapiens 0 3011
ENST00000487997 PTBP3-002 processed_transcript Homo_sapiens 0 401

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