C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 44, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102911 Slc44a1-001 ENSMUSG00000028412 10090 + 4:53440413-53622478 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102911
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102911 11.291±1.09 5.621±1.09 10.582±0.17 5.083±3.84 8.933±1.97 16.831±3.08 7.065±1.10 4.924±1.05 2.511±0.80 7.807±1.64 5.811±0.37 8.733±4.07 1.933±0.40 0.810±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00022C CIL_00022C_0003 CGP 4:53030787-53622478
CIL_00033S CIL_00033S_0002 CGP 4:53440413-53707009

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005741 IEA mitochondrial outer membrane
GO:0005886 IEA plasma membrane
GO:0015220 IDA choline transmembrane transporter activity
GO:0015871 IDA choline transport
GO:0016020 IEA membrane
GO:0016021 IDA integral component of membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000374720 SLC44A1-003 protein_coding Homo_sapiens 0 2891
ENST00000374723 SLC44A1-001 protein_coding Homo_sapiens 0 2891
ENST00000374724 SLC44A1-004 protein_coding Homo_sapiens 0 3044
ENST00000470972 SLC44A1-002 nonsense_mediated_decay Homo_sapiens 0 2891
ENST00000607692 SLC44A1-007 processed_transcript Homo_sapiens 0 252
ENST00000607701 SLC44A1-005 retained_intron Homo_sapiens 0 322

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