C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 44, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107651 Slc44a1-006 ENSMUSG00000028412 10090 + 4:53440671-53567818 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000107651
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000107651 12.155±3.62 8.637±1.29 19.410±0.24 4.063±0.68 9.826±2.56 26.527±3.03 3.200±0.20 9.256±1.38 6.135±1.08 18.029±2.43 1.212±0.17 7.996±2.22 6.706±3.05 0.731±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00022C CIL_00022C_0003 CGP 4:53030787-53622478
CIL_00033S CIL_00033S_0002 CGP 4:53440413-53707009

Gene Ontology

GO IDEvidence TypeGO Description
GO:0015220 IDA choline transmembrane transporter activity
GO:0015871 IDA choline transport
GO:0016021 IDA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000374720 SLC44A1-003 protein_coding Homo_sapiens 0 5105
ENST00000374723 SLC44A1-001 protein_coding Homo_sapiens 0 2641
ENST00000374724 SLC44A1-004 protein_coding Homo_sapiens 0 2641
ENST00000470972 SLC44A1-002 nonsense_mediated_decay Homo_sapiens 0 2767
ENST00000607692 SLC44A1-007 processed_transcript Homo_sapiens 0 252
ENST00000607701 SLC44A1-005 retained_intron Homo_sapiens 0 322

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